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A suite of tools for medical image processing focused on brain analysis
Home Page: http://brainsia.github.io/BRAINSTools/
This project forked from brainsia/brainstools
A suite of tools for medical image processing focused on brain analysis
Home Page: http://brainsia.github.io/BRAINSTools/
The BRAINSTools is a harness to assist in building the many of the BRAINSTools under development. Developers should run the "./Utilities/SetupForDevelopment.sh" script to get started. For more information on the individual BRAINSTools, please see the following link: https://github.com/BRAINSia/BRAINSTools/wiki ## Building ## Example session for a clean build: mkdir ~/src/mytester cd ~/src/mytester git clone git://github.com/BRAINSia/BRAINSTools.git cd BRAINSTools/ bash ./Utilities/SetupForDevelopment.sh mkdir -p ../BRAINSTools-build cd ../BRAINSTools-build/ CC=/usr/bin/gcc-4.2 CXX=/usr/bin/g++-4.2 ccmake ../BRAINSTools \ -DUSE_BRAINSConstellationDetector:BOOL=ON \ -DUSE_BRAINSABC:BOOL=ON ## NOTE: If you are using a version of Python different from the system default, CMake will ignore your ## environment variables. To ensure CMake points to the right version, you need to set the ## following variables as well: ## -DPYTHON_LIBRARY:PATH=/path/to/python/lib \ ## -DPYTHON_INCLUDE_DIR:PATH=/path/to/python/include make -j24 -k ; ## NOTE: The fetching of data still has problems with parallel builds, so we need to restart it at least # once make ## Testing ## BRAINSTools_MAX_TEST_LEVEL adjusts how agressive the test suite is so that long running tests or incomplete tests can easily be silenced 1 - Run the absolute minimum very fast tests (These should always pass before any code commit) 3 - Run fast tests on continous builds (These need immediate attention if they begin to fail) 5 - Run moderate nightly tests (These need immediate attention if they begin to fail) 7 - Run long running extensive test that are a burden to normal development (perhaps test 1x per week) 8 - Run tests that fail due to incomplete test building, these are good ideas for test that we don't have time to make robust) 9 - Run silly tests that don't have much untility set(BRAINSTools_MAX_TEST_LEVEL 3 CACHE STRING "Testing level for managing test burden")
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