cellcs / dataexchange-datasetjson

This project is used to manage the JSON representation for Clinical Datasets (a complement to the Dataset-XML representation) @2022

DataExchange-DatasetJson

This project is used to manage the JSON representation for Clinical Datasets (a complement to the Dataset-XML representation) @2022

APIs using Dataset-JSON

Create FAST-API and MySQL docker containers to provide data requests

Parameters are: filename (like adam/adae), fileformat (json...)

Current files are examples that provided by cdisc-org DataExchange-DatasetJson

Steps

pyenvcreate.sh will create virtul env for python codes for:

1. FASTAPI
2. Python code to read example files and write into connecrted mysql docker container.

reset.sh will generate password for mysql container and FAST-API authorization information.

localtest folder create one mysql container in local machine.

other docker-compose file and dockerfile will deploy into real env.

Testing

Local testing:

GET one dataset (here is adae.json):

GET one dataset by using file name and file format

If turn on API authorization:

GET Format

GET File Datasets

Arch

dataexchange-datasetjson's Issues

api model issue that error exception when do query

FastAPI model part does not fix mysql schema

Feature::create backend

1. create backend

mysql and FastAPI in dockers.

Offer RestAPI for examples