This project forked from doaneas/atacflow
Analysis pipeline for ATACseq data using Nextflow
This pipeline inspired by and based on the ENCODE ATAC-seq processubg pipeline and the prototype ATAC-seq pipeline developed by Anshul Kundaje's lab at Stanford University
nextflow clone DoaneAS/atacflow ./git clone https://github.com/DoaneAS/atacflow.git./data/Samplename/...trim.fastq.gz
python bin/makeIndex.py./callFlow.sh
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