chemkg / chemrof Goto Github PK

FYI there's a PyOBO export of Rhea in the OBO format available at https://github.com/biopragmatics/obo-db-ingest/tree/main/export/rhea/122

See also:

• https://gitlab.com/dgarayr/ontorxn/-/issues/1

Using metaclasses for species is interesting. Some questions that come to mind are:

1. What advantages do you get using metaclasses instead subclasses? For example, in your sides, you have nickel atom as a instance of the atom metaclass. What not have nickel as a subclass of atom?
2. In the OWL representation, the metaclass instances would be punned classes/individuals. I didn't think that reasoners worked on punned entities. Is that an acceptable loss? Or would not have an OWL version, and only have an RDF version?