chiliubio / network_protocol

A protocol for microbial co-occurrence network analysis and comparisons

A protocol for comparing microbial co-occurrence networks

Details

soil_amp.RData: 16S rDNA amplicon sequencing dataet of Chinese wetland soils.

soil_measure_diversity.RData: the abiotic factor and diversity data for Figure6.

stool_met.RData: generated by stool_met_prepare_dataset.R. The metagenomic taxonomic abundance dataset of stool samples.

stool_met_network.RData: generated by stool_met_generate_network.R. A list storing all the trans_network objects for stool_met.

edge_node_distance_examples.R: R script for showing other distance matrix analysis.

edge_node_metabolite_example.R: R script for generating the proportions of edges with specific metabolite exchange between species in stool_met.