Name: Christopher Cole
Type: User
Company: @deepgenomics
Bio: Lead scientist at Deep Genomics interested in functional, statistical, and population genomics.
Twitter: _chriscole_
Location: Toronto
Blog: chrisbcole.me
Hi there, I'm Chris.
I am currently a lead scientist at Deep Genomics in Toronto. My work involves using machine learning and AI to identify causal drug targets from human genetics data. I previously completed my DPhil working with Gerton Lunter and Thomas Milne at the University of Oxford. Check out my website for a breakdown of previous projects and repositories of interest.
aavcf
Swap allels to ancestral / derived in a VCF.
advent_of_code_2022
Solutions for the advent of code 2022
advent_of_code_2023
Solutions for the advent of code 2023
allerid
A goldi-based shiny app to identify allergens.
ancient_african_admixture
Cole et al 2021 analysis pipeline and result files.
blda
Weighted latent dirichlet allocation for bulk ATAC-seq
ccole
Wrappers and convenience functions either not yet included in a package or for personal use.
chris1221
chris1221.github.io
Personal website.
cistopic
cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data
cookbook
Flask cookbook application automatically deployed to Github pages
corge
Evaluation of Simultaneous Inference Methods for the Human Genome.
crafting_interpreters
Working through Robert Nystrom's Crafting Interpreters
deepstab
Deep learning prediction of cell-type specific RNA stability.
dotfiles
System configurations for Arch Linux, OSX, and CentOS 6.8
dphil_thesis
DPhil thesis completed at the University of Oxford
eghop_270720
Talk given at the EGHOP summer journal club
epic_rpg_converter
A Discord bot for converting between resources in Epic RPG (another Discord bot).
genomic_interval_pipeline
Pre-processing of genomic intervals for deep learning.
ggsource
Easily open the file used to generate an exported PDF from R / ggplot2.
goldi
R Package for Gene Ontology Label Discernment and Identification.
gwas_sim
Simulate a mixed-population GWAS for use in training exercises.
ima3_input
A Snakemake pipeline for creating IMa3 input from a VCF file via the Popgen Pipeline Platform.
impute
Automated imputation pipeline for arbitrary dataset and reference panels.
lanceotron
Command-line interface to the LanceOTron deep learning peak caller
ldsc
LD Score Regression (LDSC)
mchg
Validation of Multiple Comparisons techniques for the human genome
minimal_snakemake_report
An example of snakemake's reporting functionality.
particles
polyfun
PolyFun (POLYgenic FUNctionally-informed fine-mapping)
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
Django
The Web framework for perfectionists with deadlines.
Laravel
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
Microsoft
Open source projects and samples from Microsoft.
Google
Google ❤️ Open Source for everyone.
Alibaba
Alibaba Open Source for everyone
D3
Data-Driven Documents codes.
Tencent
China tencent open source team.
