Code for reproducing results/figures in the RNA G4 splicing study.
- python 3.9
- R 4.1.0
- R libraries: ggpubr, gplots, data.table
- G4Hunter (https://github.com/AnimaTardeb/G4Hunter)
- BEDTOOLS 2.30
To reproduce the figures, unzip the pre-computed data under the directory 'data', loading them into R, and running the script under the directory 'Rscript'.
The 'ana.g4.seq.py' is the in-house python script for analyzing nucleotide content and searching G4 motifs from the previous study.
The 'convert.g4hres2tab.py' is the in-house python script to convert the G4Hunter output to tables
please cite the manuscript ''