christensen-lab-dartmouth Goto Github PK
Type: Organization
Type: Organization
R scripts from Ze Zhang often used in DNA methylation analyses. Not the most clean but should be helpful
The repository stores the analytical code for the pre-release of the manuscript titled "Tumor subtype and cell type independent DNA methylation alternations reveals twelve genes associated with low stage breast carcinoma".
R code repository for statistical analysis and data visualization of manuscript "Genome-wide DNA methylation profiling shows a distinct epigenetic signature associated with Lung Macrophages in cystic fibrosis"
Programming tutorials for the Christensen Lab
Stores data for capsule-related projects
A utility to map bisulfite sequencing data to the Illumina 450K methylation CpG set
Modular framework for deep learning predictions on methylation data.
Vignette for data processing and use of the fitOxBS function from the OxyBS R package
Measurement of 5hmC in pediatric cns tumors
Preprocessing methylation pipeline, written in python. Easy to use and highly parallelized.
DNA methylation analysis using VAE
VAE methylation analysis using the Tybalt model developed by Way et al.
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