Comments (2)
I think its still fine to call it align, since the majority of the work is
aligning reads. We could also call it 'align and call' or 'process' or
'pipeline', but I think align is probably fine. We can keep thinking about
it.
Daniel B. Goodman
NSF GRFP Fellow
Division of Health Sciences and Technology
Massachusetts Institute of Technology
Bioinformatics and Integrative Genomics
P: (617) 459-2949 | E: [email protected] www.dbgoodman.com
On Wed, Sep 25, 2013 at 1:10 PM, Gleb Kuznetsov [email protected]:
Also, I realized that this tab would also control variant calling, so
perhaps the tab should be called something other than 'Align'?—
Reply to this email directly or view it on GitHubhttps://github.com//issues/32
.
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Fixed in e1c40bf.
Except for AlignmentGroups which are still in Data. We need to think about where this should eventually be.
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Related Issues (20)
- Contig assembly on bootstrap data fails HOT 1
- On variant csv export, what to do about LONG REF/ALT alleles?
- In pre-contig run cleanup, delete old error reports? HOT 1
- JBrowse warning when re-running contig pipeline HOT 2
- Contig calling shows QUEUED_TO_ASSEMBLE even though really ASSEMBLING, sometimes.
- Velvetg runs out of memory during graph building
- Make queries be case insensitive
- Jbrowse tracks for deleted alignments get left behind
- OptMAGE support doesn't work for multi-bp SNVs
- OptMAGE only works with MG1655
- Genbank exported from latest version of Geneious appears to cause error
- filter key Gene non-functional
- jbrowse contig fail
- How is extremely high-coverage defined? HOT 1
- Generate New Reference Genome: ERROR: More than one record found in handle HOT 5
- Files uploaded through browser remain in /tmp after completion
- Problem uploading samples HOT 36
- Is there any interactive/guided in-depth tutorial available? HOT 1
- Will you be updating to Python 3? HOT 1
- ALIGNMENT PIPELINE ERROR HOT 2
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