Comments (1)
Possible ways to implement this
Complex query to the materialized view containing the melted Variants
This will require some plumbing in order to come up with an elegant solution. I hope we can just hard-code a call.
Use Region model
In models.py, we have a Region model, and in fact it looks like this is the way we planned to implement this in the first place. Of course, this was the plan before we realized we needed to use materialized views so this may be computationally overwhelming.
A related idea is to cache the computation that calculates the data we want to see in the Gene view.
Other considerations
- I think we are okay not allowing filtering on this view for now.
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Related Issues (20)
- Contig assembly on bootstrap data fails HOT 1
- On variant csv export, what to do about LONG REF/ALT alleles?
- In pre-contig run cleanup, delete old error reports? HOT 1
- JBrowse warning when re-running contig pipeline HOT 2
- Contig calling shows QUEUED_TO_ASSEMBLE even though really ASSEMBLING, sometimes.
- Velvetg runs out of memory during graph building
- Make queries be case insensitive
- Jbrowse tracks for deleted alignments get left behind
- OptMAGE support doesn't work for multi-bp SNVs
- OptMAGE only works with MG1655
- Genbank exported from latest version of Geneious appears to cause error
- filter key Gene non-functional
- jbrowse contig fail
- How is extremely high-coverage defined? HOT 1
- Generate New Reference Genome: ERROR: More than one record found in handle HOT 5
- Files uploaded through browser remain in /tmp after completion
- Problem uploading samples HOT 36
- Is there any interactive/guided in-depth tutorial available? HOT 1
- Will you be updating to Python 3? HOT 1
- ALIGNMENT PIPELINE ERROR HOT 2
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