cistib / origami Goto Github PK

Dear @rbonazzola @tvmendonca,

Thank you for developing this project, is really cool! Still, I've been trying to use it, but I have encounters a few barriers:

README:

• 'Add the folders with subfolders for the Origami scripts to the MATLAB search path', I don't know if this is completely necessary (I think it worked without adding them). Still, if necessary, you could also add them automatically like (e.g.):
  addpath(fullfile(pwd,'functions'));
• https://wiki.med.harvard.edu/SysBio/Megason/ACME - It states a 403 forbidden access

Matlab R2021a

• When I try to run the pipeline from scratch, at first it only accepts '.mha' files. If remove '*.mha' from line 55 of 'OrigamiPipeline_Main.m', it now accepts only tifs.
• I select a tif that I have from PlantSeg (https://github.com/hci-unihd/plant-seg) and I get the error: ' Unrecognized field name "ImageDescription".'

Many thanks again!
Pablo