MATLAB-based image analysis pipeline for extracting single-cell direction-variant shape features from fluorescence images of folding epithelial sheets.
Thank you for developing this project, is really cool! Still, I've been trying to use it, but I have encounters a few barriers:
README:
'Add the folders with subfolders for the Origami scripts to the MATLAB search path', I don't know if this is completely necessary (I think it worked without adding them). Still, if necessary, you could also add them automatically like (e.g.): addpath(fullfile(pwd,'functions'));
When I try to run the pipeline from scratch, at first it only accepts '.mha' files. If remove '*.mha' from line 55 of 'OrigamiPipeline_Main.m', it now accepts only tifs.