Comments (4)
cpauvert
commented on August 25, 2024
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cpauvert
commented on August 25, 2024
especially for the processing examples
EDIT: Not sure that this is the most problematic as it is only optional:
https://github.com/ClavelLab/maldipickr/blob/main/dev/dereplicate-spectra.Rmd#L126-130
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cpauvert
commented on August 25, 2024
But the symbolic link creation might be:
https://github.com/ClavelLab/maldipickr/blob/main/dev/import-data.Rmd#L498
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cpauvert
commented on August 25, 2024
done in 34e12e7
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Related Issues (20)
- process_spectra.R HOT 1
- pick_spectra.R
- merge_processed_spectra.R
- Release maldipickr 1.1.1 HOT 2
- improve handling of empty spectra HOT 1
- Refactor vignettes using diataxis principles
- set a minimum R version
- Implicit and undocumented use of single-linkage clustering
- codecov coverage not updated despite GitHub Actions CI/CD success
- Release maldipickr 1.2.0 HOT 3
- error non-unique values when setting 'row.names' in `process_spectra()` HOT 1
- deprecate `rds_prefix` option in `process_spectra()` because of `{targets}`
- read in mzML files instead of fid/acqu proprietary format HOT 1
- implement `{maldipickr}` using the RforMassSpectrometry improved codebase
- Release maldipickr 1.3.0
- missing filtering on bruker log score for identification-based delineation
- add logo in svg in man/ to be able to edit
- add function to gather spectra checks stats
- bump Node.js version to 20 for Github Actions
- move the Quickstart to a specific vignette to have a "Get started" page generated for the website
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