stmvc's People
stmvc's Issues
The trained SimCLR model
Hello,it is a fantastic method for analyzing spatial transcriptomics!
From the code in Preprecessing_stMVC.py , I can see that the trained SimCLR model will be saved in [args.basePath + 'stMVC/'+ '128_0.5_200_128_500_model.pth' ] , but I can not find it in the stMVC_test_data.zip you provide , Can you share it with me?
Thank you very much!
Questions about the Ovarian Cancer Dataset
Hi,
It is a fantastic method for analyzing spatial transcriptomics!
I'm trying to detect ovarian cancer dataset using stMVC, but I'm not sure which files I should download for the ovarian cancer dataset at this url:https://www.10xgenomics.com/resources/datasets/human-ovarian-cancer-1-standard. And it doesn't seem to have expert annotations, can you share the ovarian cancer dataset with me? Thank you very much!
input data
Excuse me,there is something wrong when I applied the command wget https://zenodo.org/record/6052602/files/stMVC_test_data.zip.
the result is that ‘Unable to access this site’
Questions about Annotation_train_test_split.csv
Hi, @cmzuo11
Thank you so much for providing such a fantastic tool. I've encountered some issues while running the software.
I've noticed that there is an Annotation_train_test_split.csv
file in the example dataset DLPFC_151673. However, I'm uncertain about how this file is generated and how the columns Train_test
and Train_test_prop
in this file are defined.
Could you assist with this issue? Thank you very much.
Yizhi
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