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Name: Basheer Becerra
Type: User
Company: Harvard Medical School
Bio: Harvard PhD student in Bioinformatics & Integrative Genomics.
Location: Boston, MA
Blog: www.basheerbecerra.com
Name: Basheer Becerra
Type: User
Company: Harvard Medical School
Bio: Harvard PhD student in Bioinformatics & Integrative Genomics.
Location: Boston, MA
Blog: www.basheerbecerra.com
Welcome to the 2017 State Farm Java Coding Competition. If you have questions during the coding competition, please contact [email protected] or you can submit an issue through GitHub. Please take a look at IT employment opportunities at State Farm by visiting www.statefarm.com/IT.
Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)
Framework to test any API's for the Hack Day idea
A system for automated, high-throughput, realtime observation and conditioning experiments for Drosophila melanogaster (fruit fly)
Basheer's Personal Site
A library of JavaScript components to represent biological data
BioJS JavaScript package for interaction with the FlyMine (Intermine) service
Web application that analyzes the reverse complement of a molecular sequence
Upgrading NCBI's BLAST tool
AWS Lambda Node.JS layer containing postegresql package for the AWS Cognito Post-Confirmation trigger
Convert a directory of composite HTML files (.chtml files) to the standard .html files
Class-Qs web application
Programming Club Game
Folder in BnB - UGE scripts to retrieve cores/artifacts form human normal and human tumor samples.
Machine learning analysis of genomic copy number features
copy number feature extraction library
:exclamation: This is a read-only mirror of the CRAN R package repository. CNprep — Pre-process DNA Copy Number (CN) Data for Detection of CN Events
Run CORE on CNprep output
Taking CNprep output and slicing clusters into aberration events
Using CNprep to cluster segments generated by FACETS
From the splicing output of the CNprep results, feed the splicing event regions as inputs to CORE to determine recurrent alteration events
Subset of scripts created during the CSHL URP 2018. Developing method to extract predictive biomarkers from PDAC patient derived organoids. Using COREs from CNV and WES data from pancreatic tumor organoids to predict chemotherapeutic drug response. This repository investigates copy number preprocessing tools and also preprocesses genomic features for ML analysis.
Contains source code to easily include the CNVkit data into the process workflow
CNprep clustering on data from CNVkit copy number profiles
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.