colelab Goto Github PK

actflowcategories

Publicly available code for "Distributed network processes account for the majority of variance in localized visual category selectivity", Cocuzza et al., 2022.

actflowmapping

Data analysis code associated with Cole et al. (2016), Nature Neuroscience

actflowtoolbox

The Brain Activity Flow ("Actflow") Toolbox. Tools to quantify the relationship between connectivity and task activity through network simulations and machine learning prediction. Helps determine how connections contribute to specific brain functions.

agingactflow_release

Public code release for Mill, Gordon, Balota & Cole (2020): "Predicting dysfunctional age-related task activations from resting-state network alterations"

clinicalactflow_release

coleanticevicnetpartition

Public release of The Cole-Anticevic Brain-wide Network Partition (CAB-NP)

combinedfc

Repository for Sanchez-Romero, R., & Cole, M. W. (2021). "Combining multiple functional connectivity methods to improve causal inferences". Journal of cognitive neuroscience, 33(2), 180-194. https://doi.org/10.1162/jocn_a_01580

controlcartography

Code for: "Flexible coordinator and switcher hubs for adaptive task control". Cocuzza et al., 2020 (In Press). Journal of Neuroscience.

cpro2_learning_release

directedactflow_release

Repository for Sanchez-Romero, R., Ito, T., Mill, R. D., Hanson, S. J., & Cole, M. W. (2023). "Causally informed activity flow models provide mechanistic insight into network-generated cognitive activations". NeuroImage, 120300. https://doi.org/10.1016/j.neuroimage.2023.120300

dynamicsensorymotoregi_release

flexhubmechanism

Publicly available code for "A flexible hub connectivity mechanism for cognitive control". Manuscript in-preparation. Part of C. Cocuzza's dissertation (Aim 3).

hierarchy2020

code base for Ito T, Hearne LJ, Cole MW (2020). "A cortical hierarchy of localized and distributed processes revealed via dissociation of task activations, connectivity changes, and intrinsic timescales"

informationtransfermapping

Public code release for Ito, Kulkarni, Schultz, Mill, Chen, Solomyak, Cole (2017)

latentfc_release

Code release for McCormick et al. (2022): McCormick EM*, Arnemann KL*, Ito T, Hanson SJ, Cole MW (2022). "Latent functional connectivity underlying multiple brain states". Network Neuroscience; 6 (2): 570–590 doi:10.1162/netn_a_00234 [* = equal contribution]

motion_tacs_fmri

Kar, Ito, Cole, Krekelberg - Collaboration with Krekelberg lab

multiplecomparisonspermutationtesting

Code to perform FWE-correction for multiple comparisons using permutation testing (see Nichols & Holmes, 2001)

simplesims

A simple simulation framework for testing brain functional connectivity methods

taskfcactflow_release

Code release for Cole et al. (2021) "The functional relevance of task-state functional connectivity", Journal of Neuroscience

taskfcremovemeanactivity

Code for running simulations and data analysis from: Cole MW, Ito T, Schultz D, Mill R, Chen R, Cocuzza C (2019). "Task activations produce spurious but systematic inflation of task functional connectivity estimates". NeuroImage. doi:10.1016/j.neuroimage.2018.12.054 https://authors.elsevier.com/a/1YNWs3lc~r3Jbx