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The Brain Activity Flow ("Actflow") Toolbox. Tools to quantify the relationship between connectivity and task activity through network simulations and machine learning prediction. Helps determine how connections contribute to specific brain functions.

License: MIT License

Python 95.61% MATLAB 4.39%
activity-flow brain-connectivity brainweb fmri machine-learning neural-networks neuroimaging simulations

actflowtoolbox's People

Contributors

ccocuzza avatar ito-takuya avatar kbegany avatar kirstenpeterson avatar ljhearne avatar mwcole avatar nicolelalta avatar rubensaro avatar sammedadmuthe avatar

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Forkers

mwaskom xiazc haiyan0305 yiman00 drewwint kexie1996 xiaoyeye1117 sammedadmuthe biozid-0208

actflowtoolbox's Issues

Visualization of surface maps

I found an issue in /tools/map_to_surface.py, which is used to map results to the Glasser surface parcels. The problem is that the surface visualization is slightly different between different versions of the Glasser parcels. I'm not sure why they differ slightly, but it's important to have the border visualization match the parcels. I just fixed it by switching map_to_surface.py to use this file: ColeAnticevicNetPartition/CortexSubcortex_ColeAnticevic_NetPartition_wSubcorGSR_parcels_LR.dlabel.nii
(It was using Q1-Q6_RelatedParcellation210.LR.CorticalAreas_dil_Colors.32k_fs_RL.dlabel.nii)

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