Comments (3)
I meet the same problem. Can the authors share their "gtf" file suitable for the "episcanpy.tl.geneactivity"?
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Hi,
Very sorry for this delayed answer!
So far we have been using gif files from gencode so I don't really know where this error is coming from. But I am looking into it.
In the meantime, here is the mouse genome annotation I have been using: https://www.dropbox.com/s/2h1naiiigocacs2/gencode.vM23.primary_assembly.annotation.gtf?dl=0
Here is the human genome annotation I just tested: https://www.dropbox.com/s/jfj5bhqm28t7imb/gencode.v36.annotation.gtf?dl=0
from episcanpy.
Hi,
Is this because the data file is compressed?
I found the same error in StackOverflow.
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Related Issues (20)
- Problems when generating matrix (episcanpy.ct.bld_mtx_fly())
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