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Combiz is a full-stack data scientist based in the UK, specializing in bioinformatics and FinTech. With expertise in analyzing multimodal data, he develops comprehensive analytical solutions, including automated pipelines, machine learning models, statistical models, APIs, and visualizations.

His work with open-source software and various other projects can be found here on GitHub. For a deeper dive into his notes and projects, please visit his website.

Recent Highlights

scFlow, an R package toolkit for the analysis of scRNAseq data with higher levels of abstraction. And a Nextflow pipeline, nf-core-scflow, for automated, cloud scalable, reproducible analyses of full scRNAseq datasets using the scFlow toolkit. See the pre-print here or a lay summary here.

     

 

Standard Toolkit

python R NumPy Pandas Jupyter bash C++ linux sklearn PyTorch Keras dagster FastAPI Flask Django Kubernetes Streamlit GCP AWS PySpark dbt SQL MongoDB docker git react svelte html5 css3 javascript illustrator photoshop postman vscode

Combiz Khozoie's Projects

ckrdocker icon ckrdocker

Docker Configuration for Data Science / Bioinformatics in R

configs icon configs

Config files used to define parameters specific to compute environments at different Institutions

d3-ass1-plot icon d3-ass1-plot

Custom D3.JS plot of epigenetic data at the ASS1 gene promoter

dagster icon dagster

An orchestration platform for the development, production, and observation of data assets.

hello icon hello

Classic hello world script in Nextflow language

hierarchicell icon hierarchicell

An R package for simulating cell-type specific and hierarchical single-cell expression data

lending_club icon lending_club

Predicting creditworthiness of loan applicants using logistic regression models (with R)

ml-react-app-template icon ml-react-app-template

This is a template for creating a Machine Learning application with its front-end developed using React which interacts with a Flask service as the back-end and makes predictions.

nf-core-scflow icon nf-core-scflow

Complete analysis workflow for single-cell/nuclei RNA-sequencing data.

rann.l1 icon rann.l1

R package providing fast nearest neighbour search (wraps ANN library)

rnaseq icon rnaseq

RNA sequencing analysis pipeline using STAR, HISAT2 and Salmon with gene counts and quality control

scflow icon scflow

Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.

shrna-gui icon shrna-gui

A simple PyQT5 GUI tool for design of oligonucleotides for cloning into a vector for shRNA mediated gene knockdown

test-datasets icon test-datasets

Test data to be used for automated testing with the nf-core pipelines

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