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A conda-smithy repository for highfive.

License: BSD 3-Clause "New" or "Revised" License

Shell 43.18% Batchfile 56.82%

highfive-feedstock's Introduction

About highfive-feedstock

Feedstock license: BSD-3-Clause

Home: https://github.com/BlueBrain/HighFive

Package license: BSL-1.0

Summary: Header-only C++ HDF5 interface

Development: https://github.com/BlueBrain/HighFive

HighFive is a modern C++/C++11 friendly interface for libhdf5.

Current build status

Azure

Variant	Status
linux_64
linux_aarch64
linux_ppc64le
osx_64
osx_arm64
win_64

Current release info

Name	Downloads	Version	Platforms

Installing highfive

Installing highfive from the conda-forge channel can be achieved by adding conda-forge to your channels with:

conda config --add channels conda-forge
conda config --set channel_priority strict

Once the conda-forge channel has been enabled, highfive can be installed with conda:

conda install highfive

or with mamba:

mamba install highfive

It is possible to list all of the versions of highfive available on your platform with conda:

conda search highfive --channel conda-forge

or with mamba:

mamba search highfive --channel conda-forge

Alternatively, mamba repoquery may provide more information:

# Search all versions available on your platform:
mamba repoquery search highfive --channel conda-forge

# List packages depending on `highfive`:
mamba repoquery whoneeds highfive --channel conda-forge

# List dependencies of `highfive`:
mamba repoquery depends highfive --channel conda-forge

About conda-forge

conda-forge is a community-led conda channel of installable packages. In order to provide high-quality builds, the process has been automated into the conda-forge GitHub organization. The conda-forge organization contains one repository for each of the installable packages. Such a repository is known as a feedstock.

A feedstock is made up of a conda recipe (the instructions on what and how to build the package) and the necessary configurations for automatic building using freely available continuous integration services. Thanks to the awesome service provided by Azure, GitHub, CircleCI, AppVeyor, Drone, and TravisCI it is possible to build and upload installable packages to the conda-forge anaconda.org channel for Linux, Windows and OSX respectively.

To manage the continuous integration and simplify feedstock maintenance conda-smithy has been developed. Using the conda-forge.yml within this repository, it is possible to re-render all of this feedstock's supporting files (e.g. the CI configuration files) with conda smithy rerender.

For more information please check the conda-forge documentation.

Terminology

feedstock - the conda recipe (raw material), supporting scripts and CI configuration.

conda-smithy - the tool which helps orchestrate the feedstock. Its primary use is in the construction of the CI .yml files and simplify the management of many feedstocks.

conda-forge - the place where the feedstock and smithy live and work to produce the finished article (built conda distributions)

Updating highfive-feedstock

If you would like to improve the highfive recipe or build a new package version, please fork this repository and submit a PR. Upon submission, your changes will be run on the appropriate platforms to give the reviewer an opportunity to confirm that the changes result in a successful build. Once merged, the recipe will be re-built and uploaded automatically to the conda-forge channel, whereupon the built conda packages will be available for everybody to install and use from the conda-forge channel. Note that all branches in the conda-forge/highfive-feedstock are immediately built and any created packages are uploaded, so PRs should be based on branches in forks and branches in the main repository should only be used to build distinct package versions.

In order to produce a uniquely identifiable distribution:

If the version of a package is not being increased, please add or increase the build/number.
If the version of a package is being increased, please remember to return the build/number back to 0.

Feedstock Maintainers

highfive-feedstock's People

Contributors

Watchers

Forkers

sylvaincorlay regro-cf-autotick-bot zhihaoy tdegeus xhochy tobias-fischer

highfive-feedstock's Issues

HighFive_libdeps properties

Solution to issue cannot be found in the documentation.

I checked the documentation.

Issue

When I install HighFive on my macos M2 and I try to use it for another project, I have the following error at compilation time

ninja: error: '/Applications/Xcode_13.2.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX11.0.sdk/usr/lib/libpthread.tbd', needed by 'demos/FiniteVolume/finite-volume-amr-burgers-hat', missing and no known rule to make it

If I take a look at the generated file HighFiveTargets.cmake which is installed with the conda package, I have

# Create imported target HighFive_libdeps
add_library(HighFive_libdeps INTERFACE IMPORTED)

set_target_properties(HighFive_libdeps PROPERTIES
  INTERFACE_COMPILE_DEFINITIONS "_FORTIFY_SOURCE=2;HIGHFIVE_HAS_CONCEPTS=\$<BOOL:ON>"
  INTERFACE_INCLUDE_DIRECTORIES "/Users/loic/mambaforge/envs/samurai-test/include"
  INTERFACE_LINK_LIBRARIES "/Users/loic/mambaforge/envs/samurai-test/lib/libhdf5.dylib;/Users/loic/mambaforge/envs/samurai-test/lib/libcrypto.dylib;/Users/loic/mambaforge/envs/samurai-test/lib/libcurl.dylib;/Applications/Xcode_13.2.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX11.0.sdk/usr/lib/libpthread.tbd;/Users/loic/mambaforge/envs/samurai-test/lib/libsz.dylib;/Applications/Xcode_13.2.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX11.0.sdk/usr/lib/libz.tbd;/Applications/Xcode_13.2.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX11.0.sdk/usr/lib/libdl.tbd;/Applications/Xcode_13.2.1.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX11.0.sdk/usr/lib/libm.tbd"
  INTERFACE_SYSTEM_INCLUDE_DIRECTORIES "/Users/loic/mambaforge/envs/samurai-test/include"
)

But if I try to install HighFive manually in the same mamba environment, I have

# Create imported target HighFive_libdeps
add_library(HighFive_libdeps INTERFACE IMPORTED)

set_target_properties(HighFive_libdeps PROPERTIES
  INTERFACE_COMPILE_DEFINITIONS "HIGHFIVE_HAS_CONCEPTS=\$<BOOL:ON>;BOOST_ALL_NO_LIB;H5_USE_BOOST"
  INTERFACE_INCLUDE_DIRECTORIES "/Users/loic/mambaforge/envs/samurai-test/include;/Users/loic/mambaforge/envs/samurai-test/include"
  INTERFACE_LINK_LIBRARIES "/Users/loic/mambaforge/envs/samurai-test/lib/libhdf5.dylib"
  INTERFACE_SYSTEM_INCLUDE_DIRECTORIES "/Users/loic/mambaforge/envs/samurai-test/include;/Users/loic/mambaforge/envs/samurai-test/include"
)

and the compilation of my other project works as expected.

So, for me, there are deps that come from the recipe build and that shouldn't be present in the package installation.

Installed packages

bzip2                     1.0.8                h93a5062_5    conda-forge
c-ares                    1.23.0               h93a5062_0    conda-forge
ca-certificates           2023.11.17           hf0a4a13_0    conda-forge
cli11                     2.3.2                hb7217d7_0    conda-forge
cmake                     3.28.1               h50fd54c_0    conda-forge
fmt                       10.1.1               h6aa02a4_1    conda-forge
hdf5                      1.14.3          nompi_h5bb55e9_100    conda-forge
highfive                  2.8.0                h6b7ef73_0    conda-forge
krb5                      1.21.2               h92f50d5_0    conda-forge
libaec                    1.1.2                h13dd4ca_1    conda-forge
libcurl                   8.5.0                h2d989ff_0    conda-forge
libcxx                    16.0.6               h4653b0c_0    conda-forge
libedit                   3.1.20191231         hc8eb9b7_2    conda-forge
libev                     4.33                 h93a5062_2    conda-forge
libexpat                  2.5.0                hb7217d7_1    conda-forge
libgfortran               5.0.0           13_2_0_hd922786_1    conda-forge
libgfortran5              13.2.0               hf226fd6_1    conda-forge
libnghttp2                1.58.0               ha4dd798_1    conda-forge
libssh2                   1.11.0               h7a5bd25_0    conda-forge
libuv                     1.46.0               hb547adb_0    conda-forge
libzlib                   1.2.13               h53f4e23_5    conda-forge
llvm-openmp               17.0.6               hcd81f8e_0    conda-forge
ncurses                   6.4                  h463b476_2    conda-forge
ninja                     1.11.1               hffc8910_0    conda-forge
openssl                   3.2.0                h0d3ecfb_1    conda-forge
pugixml                   1.14                 h13dd4ca_0    conda-forge
rhash                     1.4.4                hb547adb_0    conda-forge
xtensor                   0.24.7               h1995070_0    conda-forge
xtl                       0.7.6                h6aa02a4_0    conda-forge
xz                        5.2.6                h57fd34a_0    conda-forge
zstd                      1.5.5                h4f39d0f_0    conda-forge

Environment info

mamba version : 1.4.7
     active environment : samurai-test
    active env location : /Users/loic/mambaforge/envs/samurai-test
            shell level : 1
       user config file : /Users/loic/.condarc
 populated config files : /Users/loic/mambaforge/.condarc
                          /Users/loic/.condarc
          conda version : 22.9.0
    conda-build version : not installed
         python version : 3.10.6.final.0
       virtual packages : __osx=13.0.1=0
                          __unix=0=0
                          __archspec=1=arm64
       base environment : /Users/loic/mambaforge  (writable)
      conda av data dir : /Users/loic/mambaforge/etc/conda
  conda av metadata url : None
           channel URLs : https://conda.anaconda.org/conda-forge/osx-arm64
                          https://conda.anaconda.org/conda-forge/noarch
          package cache : /Users/loic/mambaforge/pkgs
                          /Users/loic/.conda/pkgs
       envs directories : /Users/loic/mambaforge/envs
                          /Users/loic/.conda/envs
               platform : osx-arm64
             user-agent : conda/22.9.0 requests/2.28.1 CPython/3.10.6 Darwin/22.1.0 OSX/13.0.1
                UID:GID : 501:20
             netrc file : None
           offline mode : False

Error due to reminiscent build environment

Issue:

I'm getting the following link error, which seems to be reminiscent of the build of highfive itself??

make[2]: *** No rule to make target '/home/conda/feedstock_root/build_artifacts/highfive_1574264233427/_build_env/x86_64-conda_cos6-linux-gnu/sysroot/usr/lib/librt.so', needed by 'Run'.  Stop

Environment (conda list):

$ conda list
# packages in environment at /home/tdegeus/miniconda3/envs/code_mean-field:
#
# Name                    Version                   Build  Channel
_libgcc_mutex             0.1                        main
boost                     1.70.0           py38h9de70de_1    conda-forge
boost-cpp                 1.70.0               h8e57a91_2    conda-forge
bzip2                     1.0.8                h516909a_1    conda-forge
ca-certificates           2019.11.28           hecc5488_0    conda-forge
certifi                   2019.11.28               py38_0    conda-forge
click                     7.0                        py_0    conda-forge
cmake                     3.15.5               hf94ab9c_0    conda-forge
curl                      7.65.3               hf8cf82a_0    conda-forge
docopt                    0.6.2                      py_1    conda-forge
docopt.cpp                0.6.2                hc9558a2_0    conda-forge
expat                     2.2.5             he1b5a44_1004    conda-forge
fmt                       6.0.0                hc9558a2_2    conda-forge
gooseslurm                0.1.1                    py38_0    conda-forge
h5py                      2.10.0          nompi_py38h513d04c_100    conda-forge
hdf5                      1.10.5          nompi_h3c11f04_1104    conda-forge
highfive                  2.1.1                h603aa1e_1    conda-forge
icu                       64.2                 he1b5a44_1    conda-forge
krb5                      1.16.3            h05b26f9_1001    conda-forge
lapack                    3.6.1                ha44fe06_2    conda-forge
ld_impl_linux-64          2.33.1               h53a641e_7    conda-forge
libblas                   3.8.0               14_openblas    conda-forge
libcblas                  3.8.0               14_openblas    conda-forge
libcurl                   7.65.3               hda55be3_0    conda-forge
libedit                   3.1.20170329      hf8c457e_1001    conda-forge
libffi                    3.2.1             he1b5a44_1006    conda-forge
libgcc-ng                 9.2.0                hdf63c60_0    conda-forge
libgfortran               3.0.0                         1    conda-forge
libgfortran-ng            7.3.0                hdf63c60_2    conda-forge
liblapack                 3.8.0               14_openblas    conda-forge
libopenblas               0.3.7                h6e990d7_3    conda-forge
libssh2                   1.8.2                h22169c7_2    conda-forge
libstdcxx-ng              9.2.0                hdf63c60_0    conda-forge
libuv                     1.33.1               h516909a_0    conda-forge
make                      4.2.1             h14c3975_2004    conda-forge
ncurses                   6.1               hf484d3e_1002    conda-forge
numpy                     1.17.3           py38h95a1406_0    conda-forge
openblas                  0.3.7                h6e990d7_3    conda-forge
openssl                   1.1.1d               h516909a_0    conda-forge
parallel                  20191122                      0    conda-forge
perl                      5.26.2            h516909a_1006    conda-forge
pip                       19.3.1                   py38_0    conda-forge
python                    3.8.0                h357f687_5    conda-forge
readline                  8.0                  hf8c457e_0    conda-forge
rhash                     1.3.6             h14c3975_1001    conda-forge
setuptools                42.0.1                   py38_0    conda-forge
six                       1.13.0                   py38_0    conda-forge
sqlite                    3.30.1               hcee41ef_0    conda-forge
tk                        8.6.10               hed695b0_0    conda-forge
wheel                     0.33.6                   py38_0    conda-forge
xsimd                     7.4.2                hc9558a2_0    conda-forge
xtensor                   0.20.10              hc9558a2_0    conda-forge
xtl                       0.6.8                hc9558a2_0    conda-forge
xz                        5.2.4             h14c3975_1001    conda-forge
zlib                      1.2.11            h516909a_1006    conda-forge

Details about conda and system ( conda info ):

$ conda info

     active environment : code_mean-field
    active env location : /home/tdegeus/miniconda3/envs/code_mean-field
            shell level : 2
       user config file : /home/tdegeus/.condarc
 populated config files :
          conda version : 4.7.12
    conda-build version : not installed
         python version : 3.7.4.final.0
       virtual packages :
       base environment : /home/tdegeus/miniconda3  (writable)
           channel URLs : https://repo.anaconda.com/pkgs/main/linux-64
                          https://repo.anaconda.com/pkgs/main/noarch
                          https://repo.anaconda.com/pkgs/r/linux-64
                          https://repo.anaconda.com/pkgs/r/noarch
          package cache : /home/tdegeus/miniconda3/pkgs
                          /home/tdegeus/.conda/pkgs
       envs directories : /home/tdegeus/miniconda3/envs
                          /home/tdegeus/.conda/envs
               platform : linux-64
             user-agent : conda/4.7.12 requests/2.22.0 CPython/3.7.4 Linux/3.10.0-957.21.3.el7.x86_64 rhel/7.6 glibc/2.17
                UID:GID : 177478:10532
             netrc file : None
           offline mode : False

Windows package pulling-in nonexistent Boost path

The Windows package depends on Boost, but the CMake Targets script has a Boost path coming from C:\Program Files\ rather than a Boost in Conda. This makes the HighFive unusable in find_package on Windows. Please fix.

Unwanted Boost dependency with CMake

I think that the decision to require and load the Boost dependency should be left to the user.