corneliusroemer Goto Github PK

mac-config

Config files for my mac

macos-profiler

Profiler for Rust programs on macOS

mamba

The Fast Cross-Platform Package Manager

markdown-cv

a simple template to write your CV in a readable markdown file and use CSS to publish/print it.

md-cv

markdown cv / résumé built with jekyll

minimap2

A versatile pairwise aligner for genomic and spliced nucleotide sequences

minimizer

Rust implementation of a minimizer index

miniwdl

Workflow Description Language developer tools & local runner

morbidostat_phage

Code to run the morbidostat for my phage experiments.

morsify

mutantenprognose

Covid Prognosen für Deutschland

ncov-clades-schema

Renders and SVG schema of SARS-CoV-2 clade as defined by Neststrain

ncov-simple

Simplified ncov (SARS-CoV-2) workflow.

ncov-simplest

nearest-neighbour-sequence

Calculate shared mutation count based on nextclade.tsv

nextclade

Viral genome alignment, clade assignment, mutation calling, and quality checks

nextclade-full-run

nextclade-pango-eval

Evaluation of the Nextclade pango classifier

nextclade-test-sequences

nextflow

A DSL for data-driven computational pipelines

nextstrain-deploy

Deploy nextstrain builds from local/staging to staging/production

nextstrain.org

The Nextstrain website

nipah

numpy

The fundamental package for scientific computing with Python.

nwk-formatter

Formatting newick trees for manual editing

oh-my-fish

The Fish Shell Framework

outbreak.api

The data API server for outbreak.info

outbreak.info

During outbreaks of emerging diseases such as COVID-19, efficiently collecting, sharing, and integrating data is critical to scientific research. outbreak.info is a resource to aggregate all this information into a single location.

ov

🎑Feature-rich terminal-based text viewer. It is a so-called terminal pager.

pango-designation

Repository for suggesting new lineages that should be added to the current scheme