This pipeline pre-configured for people working at the Francis Crick Institue. If you're not from the Crick, it should be easy to configure the pipeline for your system. Just modify these two files:
nexflow.config
conf/process.config
Here is the documentation:
In a nutshell, if you're from the Crick and want to test it, just ssh
to CAMP and do:
git clone https://github.com/bahnk/SlideSeq
cd SlideSeq
sh run
If it fails it's probably because your MODULEPATH
is missing some locations, and/or because you don't have access to the BABS reference area (/camp/svc/reference/Genomics/babs
).
Any issues => [email protected]
. Cheers,