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PyNeval, a toolbox for quantative analysis on neuron reconstruction result.

Home Page: https://csdllab.github.io/PyNeval_doc/

License: Other

Python 99.99% Jupyter Notebook 0.01%
neuron reconstruction reconstruction-toolbox quantative-analysis

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pyneval's Issues

Add conda recipe

  • Add conda recipe to build pyneval into a conda package
  • Create a channel called csdl on anaconda to host the package

Note: use the conda-forge channel while building the package.

output results in json

If the argument of --output ends with .json, then automatically save results in the JSON format.

Add option of outputting details

The option can be:

--detail <output_folder>

  • If <output_folder> does not exist, the program should automatically create <output_folder>;
  • if <output_folder> does not exist, it should ask the user to confirm if the results should be written to the existing folder.
    -- If the user answers no, give the user further options: 1. quit the program; 2. proceeding without saving details; 3. input a new folder.

Simplify metric option names

Rename metric options to make them less verbose. The changes are:

Old New
diadem_metric diadem
ssd_metric ssd
length_metric length
branch_metric cn

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