cxhernandez / cellcount Goto Github PK

Would you mind uploading an example script or use-case? I am interested in trying to apply this to some of my research.

Hi, the idea is awesome, but I can not start the train in colab, I have the dataset and when I run
!python parser_download.py -dataset ./BBC
it not works , how should I run the command?

I also try !python setup.py install but a linux may not be a must?

I am so confusing,could you give me some guidance?

With reagrds, any help would be so grateful!

I believe I have all requested dependencies, but get this error:
Traceback (most recent call last):
File "/home/ds/programs/python_packages/bin/cellcount", line 11, in
load_entry_point('cellcount==0.1a0', 'console_scripts', 'cellcount')()
File "build/bdist.linux-x86_64/egg/cellcount/cli/main.py", line 33, in main
File "build/bdist.linux-x86_64/egg/cellcount/cli/main.py", line 38, in args_func
File "build/bdist.linux-x86_64/egg/cellcount/cli/parser_download.py", line 17, in func
ImportError: No module named request

cellcount train_fpn --dataset ./data/bbbc005
Error: Found 0 files in subfolders of: ./data/bbbc005/BBBC005_v1_images/
Supported extensions are: .jpg,.jpeg,.png,.ppm,.bmp,.pgm,.tif,.tiff,.webp

I have searched this error on website, possible solution is to change the folder structure.
But I have no idea how to redesign the folder structure without changing the code.

Thanks!

• @rbharath, @msultan look over current draft for feedback

$ cell_count download --dataset bbbc005
$ cell_count train_fpn --dataset path/to/bbbc005
$ cell_count train --dataset path/to/bbbc005

i installed package(pip install git+url), but when i try these codes it gives syntax error
(cell_count download --dataset bbbc005
File "", line 1
cell_count download --dataset bbbc005
^
SyntaxError: invalid syntax.)
How can i fix it?

how to run it?I have downloaded the bbbc005 dataset，but I can't run it

I should run main.py directly?
how to run main.py , parse_train_fpn.py or parse_train?