dalexander / bauhaus2

For testing only

bauhaus2 is a simplistic tertiary analysis engine for in-house use at PacBio, enabling execution of analysis workflows from raw data to multi-condition analysis plots.

bauhaus2 is best understood as a compiler. It accepts the user's specification of the experiment (a CSV table with a well-defined schema), validates the table, resolves the inputs (which can be referred to symbolically using runcodes, or job identifiers, or explicitly using paths), and then generates an output directory containing a Snakemake workflow and a driver script (run.sh). Users can simply execute the run.sh script---the environment will be properly configured and the workflow will execute.

How to get started using bauhaus2?

Please read the usage tutorial.

How to contribute a workflow or analysis?

Please read the [workflow author tutorial](./doc/WorkflowAuthorTutorial.md

What happened to the original bauhaus?

The original bauhaus was a prototype. It had problems, which you can read about here.

Disclaimer

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