data-lessons / deprecated-cloud-genomics-orig Goto Github PK

I'll write an intro to command line for windows 7 initially, will try to find a windows 10 machine

Related to Issue: #8

Content from files 01-Introduction2.md and choosing a cloud platform with 02-logging-onto-cloud.md to be added to beta-01-why-cloud-computing.md.

At dibsi Instructor Training, we discussed the need to re-organize the files and order of the lesson to target a novice audience.

Lesson repo:
https://github.com/data-lessons/cloud-genomics

@taylorreiter @krmaas @blasseigne @carynJohansen

1. Why Cloud Computing? to establish motivation: 01-Introduction2.md + intro to different types of platforms from 02-logging-onto-cloud.md

2. Introduction to commandline basics:

a) Finder/file system hierarchy (GUI) vs. commandline navigation with cd, ls, pwd
b) New lesson needed for Windows users to learn how to force Windows OS to show file hierarchy in explorer
c) Use existing shell lesson on files hierarchy

3. Connecting to remote instance: 02-why-cloud-computing.md + installation of software on a blank instance

4. Data to and from instance: 03-moving-data.md and 06-data-roundtripping.md, + filezilla info from hbc lesson

5. Keep background processes running with screen (need explanation) and tmux, with info from this lesson: http://www.datacarpentry.org/cloud-genomics/

6. Single analysis: 04-single-analysis.md

7. Parallel analysis: 05-parallel-analysis.md

I am working on moving over the '04-single-analysis.md' material to the new lesson 'beta-06-single-analysis.md' document

begin filling beta-04-data-to-from-instance.md with content. See #8

editing content for 06-data-roundtripping.md

See instructions given here for using jetstream for cloud computing.

I am going to proofread, check links in the file _episodes/01-introduction.md

Moving the content of 03-why-cloud-computing.md about how to connect with different systems.

cloud-genomics/_episodes/03-moving-data.md

make more clear, add learning objectives, add specific examples

I'll work on moving objectives into the overview box, refining these objectives, and defining questions for the overview.