dataprofessor / bioactivity-prediction-app

Biography

Chanin Nantasenamat, Ph.D. is a Developer Advocate, YouTuber ("Data Professor" channel) and ex-Professor of Bioinformatics. He creates educational video (>300 videos) and written (~80 blogs) contents about data science, machine learning and bioinformatics on YouTube and various blogging platforms. He's also published >160 research/review articles in peer-review journals at the interface of machine learning, biology and chemistry for exploring the underlying origins of protein function where such understanding holds great implication for drug discovery.

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bioactivity-prediction-app's Issues

Wrong Links

Hi there! I absolutely love your content. I just wanted to share that the first link actually takes you to the #21 linked below:
https://www.youtube.com/watch?v=htBIP17S-20&t=277s

Obviously that is the wrong tutorial video. But the picture takes you to the correct video.

Doubts

Hello prof Chanin Nantasenamat,
first, let me say thanks for your videos. It's opening a part of my lab for Chemoinformatics in Rio (Brazil).

So, let me go for a question: I'm having a though time to run padelpy to get descriptors from a list of SMILES and structure Objects in a dataframe I have in Jupyter Notebook. Maybe I installed padelpy wrongly or my limitation in understanding this can also be the error I'm getting from using wget. I'm following this: https://github.com/ecrl/padelpy and https://analyticsindiamag.com/hands-on-guide-to-padelpy-for-ml-model-building/, but I think I need extensions that I don't know of..
Any tips?

Thank you
Ricardo Borges

error in ubuntu 20

git clone https://github.com/dataprofessor/bioactivity-prediction-app.git
cd bioactivity-prediction-app
wget https://raw.githubusercontent.com/dataprofessor/moldesc-app/main/requirements.txt
pip install -r requirements.txt

show this

root@two-ubuntu-s-8vcpu-16gb-nyc1-01:~/bioactivity-prediction-app# pip install -r requirements.txt
Collecting streamlit==0.71.0
  Downloading streamlit-0.71.0-py2.py3-none-any.whl (7.4 MB)
     |████████████████████████████████| 7.4 MB 27.4 MB/s
Collecting pandas==1.1.3
  Downloading pandas-1.1.3-cp38-cp38-manylinux1_x86_64.whl (9.3 MB)
     |████████████████████████████████| 9.3 MB 38.3 MB/s
Collecting base58==2.0.1
  Downloading base58-2.0.1-py3-none-any.whl (4.3 kB)
ERROR: Could not find a version that satisfies the requirement subprocess (from -r requirements.txt (line 4)) (from versions: none)
ERROR: No matching distribution found for subprocess (from -r requirements.txt (line 4))