Comments (4)
dauparas
commented on July 19, 2024
3
I added the script for making PDBID_CHAINID.pt and PDBID.pt: https://github.com/dauparas/ProteinMPNN/blob/main/training/parse_cif_noX.py
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smilenaderi
commented on July 19, 2024
Yes I really need it to? Did you manage to solve it? if so could you please share
thanks very much
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smilenaderi
commented on July 19, 2024
@decarboxy is there any updates on this? could you please share your codes for preparing data. thanks
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smilenaderi
commented on July 19, 2024
Thank you so much for sharing!
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Related Issues (20)
- Questions about model weights
- .Fa Output reorganization question
- Sampling temperature for flexible chains
- what pdbx package does parse_cif_noX.py expect? HOT 1
- Global_score
- No use of GPU?
- `parse_cif_noX.py` misses some chains in CATH? HOT 2
- Training model
- Retrieve per-position scores or score a chain in the context of another
- whether to redesign low confidence aas
- Design complexes with unknown chains (proposed fix included)
- Amino acid sequence has too many "K/E" HOT 2
- How do I use a PSSM with proteinMPNN?
- Need of assistance and advising
- Model is adding an amino acid to the original sequence HOT 5
- Creates hydrophobic surface patches wit many Ala side chains HOT 2
- Training time HOT 1
- What is the difference between --conditional_probs_only_backbone and --unconditional_probs_only HOT 1
- Empty parsed_pdbs.jsonl file from parse_multiple_chains.py helper script? HOT 1
- RuntimeError: Class values must be smaller than num_classes. | protein_mpnn_utils.py & mask_size issue?
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