Name: Ed Davis
Type: User
Company: Oregon State University
Bio: Senior Bioinformatics Scientist in the Center for Quantitative Life Sciences at Oregon State University (he/him)
Location: Corvallis, OR
Blog: cqls.oregonstate.edu
agat
Another Gtf/Gff Analysis Toolkit
alv
A console-based alignment viewer
automlsa2
Automated Multi-Locus Sequence Analysis phylogenetic tree construction software
automlsa2-examples
Example datasets for automlsa2 script.
bakta
Rapid & standardized annotation of bacterial genomes & plasmids
basta
Basic Sequence Taxonomy Annotator
bracken
Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.
btop
A monitor of resources
claatu
clinker
Gene cluster comparison figure generator
cv
davis-2022-zam
Analysis for the Davis et al 2022 PLOS ZAM study.
deicode
Robust Aitchison PCA from sparse count data
demoshell
Simplified shell for giving live demos
drep
Rapid comparison and dereplication of genomes
famsa
Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)
funannotate
Eukaryotic Genome Annotation Pipeline
get_assemblies
Download assembly files from NCBI
git-cheat-sheet
:octocat: git and git flow cheat sheet
hbh-2021
Hypoxic barrier hypothesis manuscript data analysis
linkview
DNA序列比对结果 可视化展示工具
ls-bsr
Large scale Blast Score Ratio (BSR) analysis
mitobim
MITObim - mitochondrial baiting and iterative mapping
moore-2021-acetone
Acetone monooxygenase (SAR11_0845) homolog analysis using Tara metatranscriptome data
neovim-settings
primerclip
Swift Accel-Amplicon primer trimming tool for fast alignment-based primer trimming
qrcode.show
[WORKING PROTOTYPE] Generate QR code easily for free - QR Code Generation as a Service
r-pilot
A minimal ggplot2 theme with an accessible discrete color palette.
ray
readme-template
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
Django
The Web framework for perfectionists with deadlines.
Laravel
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
Microsoft
Open source projects and samples from Microsoft.
Google
Google ❤️ Open Source for everyone.
Alibaba
Alibaba Open Source for everyone
D3
Data-Driven Documents codes.
Tencent
China tencent open source team.
