multiple gene copies about automlsa2

[davised]

Hi Pablo,

Thanks for sending the message.

In the instance of multi-copy genes, only the highest scoring blastn/tblastn search will be retained. In this way, the specific target can change depending on the query gene used in the search.

Because of the way automlsa2 gathers the subject sequences, there is no easy way to determine consensus sequences or allow multi-copy hits.

Hopefully this makes sense. Feel free to ask additional questions.

[pavlo888]

Hi @davised

Thanks for your reply! It makes total sense.

Cheers,
Pablo