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WSI classification

License: MIT License

Python 100.00%
bracs camelyon16 computational-pathology digital-pathology multiple-instance-learning pathology-image whole-slide-image acmil weakly-supervised-learning histopathology

acmil's Issues

Attention Map

Hello! Thanks for your great work!
I run ACMIL on my own dataset, it gets good result and I want to draw an attention map to verify it, could you provide the code corresponding to attention map? Thanks.

Extracted patch features using SSL ViT-S/16 on camelyon16

Hi,
Thank you for your work. It's very amazing!
Is it possible for you to provide me with the Extracted patch features using SSL ViT-S/16 on camelyon16? I would appreciate it if you could provide it to me.
I am looking forward to your reply!

questions about comparison experiments

Thank you for your excellent work! You have provided the codes and operation modes of ABMIL, CLAM, DAMIL, TransMIL and DTFD-MIL, but I noticed that the comparison table of your paper also provided the comparison results of IBMIL and MHIM-MIL. Could you please provide the operation modes of IBMIL and MHIM-MIL?

Question on the results of TransMIL and ABMIL

Hi, it‘s a nice work, thanks for your contribution. But in table 1, I have some question about the performance of TransMIL and ABMIL. In your work, the results of ABMIL is better with both two backbones.
image
But in origional TransMIL paper, the results is the opposite one. So have you thought about the reason?Can this account for the different backbone?Since in TransMIL, they use res50 to extract features.
image

Question of normalization parameters used for feature extraction?

Thanks for your nice work. I would like to know in what way dino_vit_small_patch16_ep200.torch goes through the normalization of the training images because in practice we often put the test images through the same normalization process as the training set, e.g.

transforms_beit3 = transforms.Compose([
transforms.Resize((224,224), interpolation=3), transforms.
transforms.ToTensor(),
transforms.Normalize(mean= (0.5, 0.5, 0.5), std= (0.5, 0.5, 0.5))
])

trnsfrms_CTransPath_Brow_iBOTViT = transforms.Compose(
[
transforms.Resize((224,224)),
transforms.ToTensor(),
transforms.Normalize(mean = (0.485, 0.456, 0.406), std = (0.229, 0.224, 0.225))
]
)

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