dcbia-ortholab / pickandpaintextension

Pick’n Paint

What is it?

Pick’n Paint is a module developed for 3D Slicer to define regions of interest (ROI) on 3D models (vtk files only). After defining ROIs on a model of reference, it is possible to propagate them over different time point models.

License

Please see LICENSE.txt

pickandpaintextension's Issues

Switching selected fiducial list should update the currently-visible ROI

Related to #21. Possibly related to #13.

Steps to reproduce:

1. Open PickAndPaint, select a model.
2. Create a new fiducial list (MarkupsFiducial)
3. Add a point and set a radius.
4. Create a new fiducial list (MarkupsFiducial_1). Desired behavior: the ROI associated with MarkupsFiducial should no longer be visible.
5. Add a point and set a radius.
6. Select the first fiducial list (MarkupsFiducial). Desired behavior: the visible ROI should switch back to the first one.

Instead the visible ROI only switches when a new point is added.

Discovered while investigating #16.

BUG: Multiple ROIs do not work

Common data structure disabled the possibility of having multiple ROIs

Selected ROIs cannot be saved and do not show in MeshStatistics

@jcfr
@bpaniagua
@luciacev

Selected ROIs in Pick n' Paint are not saved. We need the landmarks in the fiducial list to be saved with the selected ROI , so we can then quantify differences and compute the ROIs statistics with Mesh Statistics. Without these tools we cannot quantify local changes in correspondent meshes properly. We had an issue with selected multiple ROIs since JB Vimort implemented the fiducial list that Lucie Macron wrote. Please see the video tutorial 5C in Youtube to see how it was designed to work: https://www.youtube.com/watch?v=3kHT3IDoyy0.
Please let me know if the issue is clearly described.
Thank you!

Re-fork repositories to avoid confusion

@luciemac To avoid confusion, could you delete your project luciemac/PickAndPaintExtension and re-fork the one hosted in the DCBIA-OrthoLab organization. See https://github.com/DCBIA-OrthoLab/PickAndPaintExtension

The fork graph currently shows this:

Thanks 🙏

Multiple ROI during pick and paint

Hello @allemangD
Me and @luciacev cannot create multiple ROIS in the pick and paint module or surface registration module (CMF reg)
When we create more than one landmark, we are not able to select a region of interest, it only works when we select a single landmark.
Please, can you help?
Jonas

BUG: ROIs not displayed after multiple ROI selection

ROIs wont be displayed unless Slicer is restarted everytime a single Roi is selected.

Renaming a fiducial list does not rename the corresponding ROI.

Steps to reproduce:

1. Open PickAndPaint; select a model.
2. Add a new fiducial list (MarkupsFiducial)
3. Rename that fiducial list (Alpha)
4. Open Models module, select the model.
5. View model scalars; the scalar will still be called Model_MarkupsFiducial_ROI, rather than Model_Alpha_ROI.

Discovered while investigating #16.

Editing multiple ROIs can crash Slicer.

Steps to reproduce:

1. Open PickAndPaint; select a model.
2. Create a new fiducial list (MarkupsFiducial)
3. Add a point
4. Create a new fiducial list (MarkupsFiducial_1)
5. Add a point
6. Select the first fiducial list (MarkupsFiducial)
7. Add a point. Slicer crashes.

Discovered while investigating #16.