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Automatically exported from code.google.com/p/copasi-simple-api
I added an example in the docs to this method:
int cSetAssignmentRule(copasi_model model, const char * species, const char *
formula);
Not sure if the example is correct, can you check. Not sure what formula should
be, eg S1 = sin (time*k1), sin (time*k1)?
Also am I allowed to use the variable 'time'?
Original issue reported on code.google.com by [email protected]
on 5 Oct 2011 at 4:40
The link to the defines page is broken, see
http://copasi-simple-api.googlecode.com/svn/trunk/documentation/html/globals.htm
l
and look for All Functions Defines buttons
Original issue reported on code.google.com by [email protected]
on 4 Oct 2011 at 3:03
Generate 32 bit debug binaries
Original issue reported on code.google.com by [email protected]
on 4 Oct 2011 at 2:58
Fix broken link on project home page:
Windows binaries (with Debug symbols)
Original issue reported on code.google.com by [email protected]
on 4 Oct 2011 at 2:59
All the hyper links on page:
http://copasi-simple-api.googlecode.com/svn/trunk/documentation/html/_t_c__struc
ts_8h_source.html
are broken.
Original issue reported on code.google.com by [email protected]
on 4 Oct 2011 at 3:01
The links to TC_structs.c and TC_structs.h are broken on page:
http://copasi-simple-api.googlecode.com/svn/trunk/documentation/html/files.html
Original issue reported on code.google.com by [email protected]
on 4 Oct 2011 at 3:04
There is a method called cReadAntimonyFile but no method cReadAntimonyString.
Both methods are available for SBML. For completeness
there should be a sReadAntimonyFile.
Original issue reported on code.google.com by [email protected]
on 5 Oct 2011 at 4:28
I noted that the error messages returned by cReadSBML include both warnings and
real errors. Does Copasi distinguish between the two or must we parse the text
that is returned to determine what is a warning and what is an error?
Original issue reported on code.google.com by [email protected]
on 7 Oct 2011 at 9:08
What steps will reproduce the problem?
1. none. I don't understand how to use that code.
2.
3.
What is the expected output? What do you see instead?
Can I write a model such as the
"antimony/doc/examples/biomodels/BIOMD0000000100.txt" ?
How can I upload a model like this one in copasi ?
What version of the product are you using? On what operating system?
copasi-simple-api Linux 12.04
Please provide any additional information below.
Original issue reported on code.google.com by [email protected]
on 12 Feb 2013 at 10:55
The documentation has an example for the cCreateEvent, check that the example
is correct.
Original issue reported on code.google.com by [email protected]
on 4 Oct 2011 at 11:57
The help comment on
cSetConcentration cSetConcentration(copasi_model, const char * species, double
value);
states that the argument, 'value' can be concentration or count. What
determines what it actually is?
Original issue reported on code.google.com by [email protected]
on 5 Oct 2011 at 4:37
Generate 64 bit debug and non-debug binaries
Original issue reported on code.google.com by [email protected]
on 4 Oct 2011 at 2:58
I think we should change the name of cSetBoundarySpecies to the more generic
name, cSetSpeciesType. When I saw the method name, cSetBoundarySpecies I
thought that's what it did but it will in fact also convert a boundary species
to a floating species, I assume I am correct in this?
Original issue reported on code.google.com by [email protected]
on 5 Oct 2011 at 4:34
Hi,
I'm a new user and had difficulties with the project home page (I think it is
not updated).
First the example is not available (but I found biomodels in anamotony folder).
Then, I'm on Linux and while I'm doing the last step (just after the "generate"
one) I can't "make copasi_api_test". In fact, I read the README and type make
in the BUILD folder. I hope it is correct ^^
It is just a remark about what is written on this page but I had no real
problems for the moment.
Fanny P.
Original issue reported on code.google.com by [email protected]
on 10 Feb 2013 at 6:06
Documentation for tc_struct.h needs to be generated
Original issue reported on code.google.com by [email protected]
on 4 Oct 2011 at 2:57
There needs to be some documentation on the main page of the doxygen
documentation.
Original issue reported on code.google.com by [email protected]
on 4 Oct 2011 at 3:00
The matrices returned by the MCA calls need documentation on what the rows and
columns are.
Original issue reported on code.google.com by [email protected]
on 5 Oct 2011 at 4:54
For methods such as cGetConcentrations which return a vector, how do we know
which element corresponds to which species?
Original issue reported on code.google.com by [email protected]
on 12 Oct 2011 at 7:33
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