A standalone application allowing to visualize CRISPR-Cas systems from a JSON file generated by CRISPRCasFinder. Further information are available at CRISPRCasFinder website and in the corresponding publication.
The user can download or clone CRISPRCasViewer repository on their own machine, then open file "CRISPRCasViewer.html" with one of the following web browsers:
The user can then upload a JSON result file (e.g. "result.json") obtained from CRISPRCasFinder, select a sequence, select a visualization option, and click on "Launch view!".
(A) Welcome page, (B) table representation, (C) circular view (using BioCircos), (D) scatter plot view (using Highcharts), (E) linear view (using TnT API).
The following JavaScript libraries have been used:
If you use this tool, please cite:
Cui Y, Chen X, Luo H, Fan Z, Luo J, He S, Yue H, Zhang P, Chen R. BioCircos.js: an interactive Circos JavaScript library for biological data visualization on web applications. Bioinformatics. 2016 Jun 1;32(11):1740-2. DOI: https://doi.org/10.1093/bioinformatics/btw041 PMID:26819473
Pignatelli M. TnT: a set of libraries for visualizing trees and track-based annotations for the web. Bioinformatics. 2016 Aug 15;32(16):2524-5. DOI: https://doi.org/10.1093/bioinformatics/btw210 PMID:27153646
Couvin D, Bernheim A, Toffano-Nioche C, Touchon M, Michalik J, Néron B, Rocha EPC, Vergnaud G, Gautheret D, Pourcel C. CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins. Nucleic Acids Res. 2018 Jul 2;46(W1):W246-W251. DOI: https://doi.org/10.1093/nar/gky425 PMID:29790974
A more complete User Manual is available at the following link: https://crisprcas.i2bc.paris-saclay.fr/Home/DownloadFile?filename=CRISPRCasFinder_Viewer_manual.pdf
React
Typescript
Django
Laravel
Facebook
Microsoft
Google
Alibaba
D3
Tencent