should run without any errors and create the conda environment as defined in environment.yml.
When creating the conda environment, conda tries to solve found conflicts and fails to do so. It might have something to do with my CUDA driver.
How could I deal with this incompatibility?
~/repos/dedop-core$ conda env create --file environment.yml
Collecting package metadata (repodata.json): done
Solving environment: \
Found conflicts! Looking for incompatible packages.
This can take several minutes. Press CTRL-C to abort.
failed |
Solving environment: /
Found conflicts! Looking for incompatible packages.
This can take several minutes. Press CTRL-C to abort.
failed /
UnsatisfiableError: The following specifications were found to be incompatible with each other:
Output in format: Requested package -> Available versions
Package numpy conflicts for:
scipy==1.0.0 -> numpy[version='>=1.9|>=1.9.3,<2.0a0']
bokeh==0.12.13 -> numpy[version='>=1.7.1']
matplotlib==2.0.2 -> numpy
numexpr==2.6.4 -> numpy[version='>=1.11|>=1.8|>=1.9.3,<2.0a0']
netcdf4==1.2.4 -> numpy[version='1.10.*|1.11.*|1.12.*']
numpy==1.11.3
pyproj==1.9.5.1 -> numpy
Package libffi conflicts for:
pytest-cov -> python -> libffi[version='3.2.*|>=3.2.1,<3.3.0a0|>=3.3,<3.4.0a0|>=3.2.1,<3.3a0']
numpy==1.11.3 -> python[version='>=3.6,<3.7.0a0'] -> libffi[version='3.2.*|>=3.2.1,<3.3.0a0|>=3.3,<3.4.0a0|>=3.2.1,<3.3a0']
cate-util==1.1.0.dev1=py36_0 -> python[version='>=3.6,<3.7.0a0'] -> libffi[version='3.2.*|>=3.2.1,<3.3.0a0|>=3.3,<3.4.0a0|>=3.2.1,<3.3a0']
matplotlib==2.0.2 -> python[version='>=3.6,<3.7.0a0'] -> libffi[version='3.2.*|>=3.2.1,<3.3.0a0|>=3.3,<3.4.0a0|>=3.2.1,<3.3a0']
tornado[version='>=4.0,<5.0'] -> python[version='>=3.8,<3.9.0a0'] -> libffi[version='3.2.*|>=3.2.1,<3.3.0a0|>=3.3,<3.4.0a0|>=3.2.1,<3.3a0']
netcdf4==1.2.4 -> python=3.6 -> libffi[version='3.2.*|>=3.2.1,<3.3.0a0|>=3.3,<3.4.0a0|>=3.2.1,<3.3a0']
numexpr==2.6.4 -> python=3.6 -> libffi[version='3.2.*|>=3.2.1,<3.3.0a0|>=3.3,<3.4.0a0|>=3.2.1,<3.3a0']
ipywidgets==7.1.1 -> python=3.6 -> libffi[version='3.2.*|>=3.2.1,<3.3.0a0|>=3.3,<3.4.0a0|>=3.2.1,<3.3a0']
bokeh==0.12.13 -> python=3.6 -> libffi[version='3.2.*|>=3.2.1,<3.3.0a0|>=3.3,<3.4.0a0|>=3.2.1,<3.3a0']
jupyter==1.0.0 -> python -> libffi[version='3.2.*|>=3.2.1,<3.3.0a0|>=3.3,<3.4.0a0|>=3.2.1,<3.3a0']
pytest -> python[version='>=3.8,<3.9.0a0'] -> libffi[version='3.2.*|>=3.2.1,<3.3.0a0|>=3.3,<3.4.0a0|>=3.2.1,<3.3a0']
pyproj==1.9.5.1 -> python[version='>=3.6,<3.7.0a0'] -> libffi[version='3.2.*|>=3.2.1,<3.3.0a0|>=3.3,<3.4.0a0|>=3.2.1,<3.3a0']
scipy==1.0.0 -> python=3.6 -> libffi[version='3.2.*|>=3.2.1,<3.3.0a0|>=3.3,<3.4.0a0|>=3.2.1,<3.3a0']
Package setuptools conflicts for:
bokeh==0.12.13 -> jinja2[version='>=2.7'] -> setuptools
netcdf4==1.2.4 -> setuptools
matplotlib==2.0.2 -> setuptools
pytest-cov -> setuptools
pytest -> setuptools[version='>=40.0']
pytest-cov -> pytest[version='>=4.6'] -> setuptools[version='>=40.0']
ipywidgets==7.1.1 -> ipython[version='>=4.0.0'] -> setuptools[version='>=18.5']
python==3.6 -> pip -> setuptools
numexpr==2.6.4 -> setuptools
Package six conflicts for:
bokeh==0.12.13 -> python-dateutil[version='>=2.1'] -> six[version='>=1.5']
pytest -> six[version='>=1.10.0']
numpy==1.11.3 -> mkl-service[version='>=2,<3.0a0'] -> six
tornado[version='>=4.0,<5.0'] -> singledispatch -> six
pytest-cov -> pytest[version='>=4.6'] -> six[version='>=1.10.0']
pytest -> more-itertools[version='>=4.0'] -> six[version='>=1.0.0,<2.0.0']
matplotlib==2.0.2 -> cycler[version='>=0.10'] -> six[version='>=1.5']
ipywidgets==7.1.1 -> traitlets[version='>=4.3.1,<5.0.0'] -> six
bokeh==0.12.13 -> six[version='>=1.5.2']
Package certifi conflicts for:
matplotlib==2.0.2 -> setuptools -> certifi[version='>=2016.09|>=2016.9.26']
bokeh==0.12.13 -> tornado[version='>=4.3'] -> certifi
numexpr==2.6.4 -> setuptools -> certifi[version='>=2016.09|>=2016.9.26']
pytest-cov -> setuptools -> certifi[version='>=2016.09|>=2016.9.26']
pytest -> setuptools[version='>=40.0'] -> certifi[version='>=2016.09|>=2016.9.26']
netcdf4==1.2.4 -> setuptools -> certifi[version='>=2016.09|>=2016.9.26']
tornado[version='>=4.0,<5.0'] -> certifi
Package python conflicts for:
pytest -> more-itertools[version='>=4.0'] -> python[version='3.7.*|3.8.*|>=3.4|>=3.8.0a,<3.9.0a0']
bokeh==0.12.13 -> jinja2[version='>=2.7'] -> python[version='3.4.*|>=3.7,<3.8.0a0|>=3.8,<3.9.0a0']
python==3.6
pytest -> python[version='2.7.*|3.5.*|3.6.*|>=2.7,<2.8.0a0|>=3.6,<3.7.0a0|>=3.7,<3.8.0a0|>=3.8,<3.9.0a0|>=3.5,<3.6.0a0|3.4.*']
cate-util==1.1.0.dev1=py36_0 -> python[version='>=3.6,<3.7.0a0']
netcdf4==1.2.4 -> python[version='2.7.*|3.5.*|3.6.*|3.4.*']
pytest-cov -> coverage[version='>=4.4'] -> python[version='>=3.8,<3.9.0a0']
scipy==1.0.0 -> python[version='2.7.*|3.5.*|3.6.*|>=3.6,<3.7.0a0|>=3.5,<3.6.0a0|>=2.7,<2.8.0a0']
matplotlib==2.0.2 -> python[version='>=2.7,<2.8.0a0|>=3.5,<3.6.0a0|>=3.6,<3.7.0a0']
ipywidgets==7.1.1 -> python[version='2.7.*|3.5.*|3.6.*|>=3.6,<3.7.0a0|>=3.5,<3.6.0a0|>=2.7,<2.8.0a0']
tornado[version='>=4.0,<5.0'] -> backports_abc[version='>=0.4'] -> python
jupyter==1.0.0 -> python[version='2.7.*|3.5.*|3.6.*|>=3.8,<3.9.0a0|>=3.5,<3.6.0a0|>=3.6,<3.7.0a0|>=2.7,<2.8.0a0|>=3.7,<3.8.0a0']
bokeh==0.12.13 -> python[version='2.7.*|3.5.*|3.6.*|>=3.6,<3.7.0a0|>=3.5,<3.6.0a0|>=2.7,<2.8.0a0']
pyproj==1.9.5.1 -> python[version='>=2.7,<2.8.0a0|>=3.6,<3.7.0a0|>=3.7,<3.8.0a0|>=3.5,<3.6.0a0']
numexpr==2.6.4 -> python[version='2.7.*|3.5.*|3.6.*|>=3.6,<3.7.0a0|>=3.5,<3.6.0a0|>=2.7,<2.8.0a0']
pyproj==1.9.5.1 -> numpy -> python[version='2.7.*|3.5.*|3.6.*|>=3.8,<3.9.0a0|3.4.*']
numexpr==2.6.4 -> numpy[version='>=1.11'] -> python[version='3.4.*|>=3.7,<3.8.0a0|>=3.8,<3.9.0a0']
matplotlib==2.0.2 -> cycler[version='>=0.10'] -> python[version='2.7.*|3.4.*|3.5.*|3.6.*|>=3.8,<3.9.0a0|>=3.7,<3.8.0a0|<3']
ipywidgets==7.1.1 -> ipykernel[version='>=4.5.1'] -> python[version='3.4.*|>=3|>=3.4|>=3.7,<3.8.0a0|>=3.8,<3.9.0a0|>=3.5']
jupyter==1.0.0 -> ipykernel -> python[version='3.4.*|>=3|>=3.4|>=3.5']
scipy==1.0.0 -> numpy[version='>=1.9'] -> python[version='3.4.*|>=3.7,<3.8.0a0|>=3.8,<3.9.0a0']
netcdf4==1.2.4 -> numpy=1.12 -> python[version='>=2.7,<2.8.0a0|>=3.6,<3.7.0a0|>=3.5,<3.6.0a0|>=3.8,<3.9.0a0|>=3.7,<3.8.0a0']
pytest-cov -> python[version='2.7.*|3.5.*|3.6.*|3.4.*|>=3.7,<3.8.0a0|>=3.6,<3.7.0a0|>=2.7,<2.8.0a0|>=3.5,<3.6.0a0']
tornado[version='>=4.0,<5.0'] -> python[version='2.7.*|3.5.*|3.6.*|>=2.7,<2.8.0a0|>=3.6,<3.7.0a0|>=3.8,<3.9.0a0|>=3.7,<3.8.0a0|3.4.*|>=3.5,<3.6.0a0']
Package zlib conflicts for:
matplotlib==2.0.2 -> freetype[version='>=2.8,<2.9.0a0'] -> zlib[version='1.2.*|1.2.11|1.2.8|1.2.11.*']
pytest-cov -> python -> zlib[version='1.2.*|1.2.11|>=1.2.11,<1.3.0a0|1.2.8|1.2.11.*']
ipywidgets==7.1.1 -> python=3.6 -> zlib[version='1.2.*|1.2.11|>=1.2.11,<1.3.0a0|1.2.8|1.2.11.*']
scipy==1.0.0 -> python=3.6 -> zlib[version='1.2.*|1.2.11|>=1.2.11,<1.3.0a0|1.2.8|1.2.11.*']
matplotlib==2.0.2 -> zlib[version='>=1.2.11,<1.3.0a0']
cate-util==1.1.0.dev1=py36_0 -> python[version='>=3.6,<3.7.0a0'] -> zlib[version='1.2.*|1.2.11|>=1.2.11,<1.3.0a0|1.2.8']
netcdf4==1.2.4 -> hdf5[version='1.8.17|1.8.17.*'] -> zlib[version='1.2.*|>=1.2.11,<1.3.0a0|1.2.11|1.2.8|1.2.11.*']
python==3.6 -> zlib=1.2
tornado[version='>=4.0,<5.0'] -> python[version='>=3.8,<3.9.0a0'] -> zlib[version='1.2.*|1.2.11|>=1.2.11,<1.3.0a0|1.2.8|1.2.11.*']
hdf4==4.2.12 -> zlib=1.2
numpy==1.11.3 -> python[version='>=3.6,<3.7.0a0'] -> zlib[version='1.2.*|1.2.11|>=1.2.11,<1.3.0a0|1.2.8|1.2.11.*']
bokeh==0.12.13 -> python=3.6 -> zlib[version='1.2.*|1.2.11|>=1.2.11,<1.3.0a0|1.2.8|1.2.11.*']
jupyter==1.0.0 -> python -> zlib[version='1.2.*|1.2.11|>=1.2.11,<1.3.0a0|1.2.8|1.2.11.*']
pyproj==1.9.5.1 -> python[version='>=3.6,<3.7.0a0'] -> zlib[version='1.2.*|1.2.11|>=1.2.11,<1.3.0a0|1.2.8|1.2.11.*']
numexpr==2.6.4 -> python=3.6 -> zlib[version='1.2.*|1.2.11|>=1.2.11,<1.3.0a0|1.2.8|1.2.11.*']
pytest -> python[version='>=3.8,<3.9.0a0'] -> zlib[version='1.2.*|1.2.11|>=1.2.11,<1.3.0a0|1.2.8|1.2.11.*']
Package mkl_random conflicts for:
bokeh==0.12.13 -> numpy[version='>=1.7.1'] -> mkl_random[version='>=1.0.2,<2.0a0|>=1.0.4,<2.0a0']
pyproj==1.9.5.1 -> numpy -> mkl_random[version='>=1.0.2,<2.0a0|>=1.0.4,<2.0a0']
matplotlib==2.0.2 -> numpy -> mkl_random[version='>=1.0.2,<2.0a0|>=1.0.4,<2.0a0']
scipy==1.0.0 -> numpy[version='>=1.9'] -> mkl_random[version='>=1.0.2,<2.0a0|>=1.0.4,<2.0a0']
numexpr==2.6.4 -> numpy[version='>=1.11'] -> mkl_random[version='>=1.0.2,<2.0a0|>=1.0.4,<2.0a0']
Package python-dateutil conflicts for:
matplotlib==2.0.2 -> python-dateutil
bokeh==0.12.13 -> python-dateutil[version='>=2.1']
Package ca-certificates conflicts for:
netcdf4==1.2.4 -> python=2.7 -> ca-certificates
scipy==1.0.0 -> python=2.7 -> ca-certificates
jupyter==1.0.0 -> python -> ca-certificates
bokeh==0.12.13 -> python=2.7 -> ca-certificates
pytest-cov -> python -> ca-certificates
numexpr==2.6.4 -> python=2.7 -> ca-certificates
tornado[version='>=4.0,<5.0'] -> python[version='>=2.7,<2.8.0a0'] -> ca-certificates
pyproj==1.9.5.1 -> python[version='>=2.7,<2.8.0a0'] -> ca-certificates
ipywidgets==7.1.1 -> python=2.7 -> ca-certificates
matplotlib==2.0.2 -> python[version='>=2.7,<2.8.0a0'] -> ca-certificates
python==3.6 -> openssl=1.0 -> ca-certificates
numpy==1.11.3 -> python[version='>=2.7,<2.8.0a0'] -> ca-certificates
pytest -> python[version='>=2.7,<2.8.0a0'] -> ca-certificates
Package openblas-devel conflicts for:
numpy==1.11.3 -> openblas[version='>=0.3.3,<0.3.4.0a0'] -> openblas-devel[version='0.3.3|>=0.2.20,<0.2.21.0a0|0.3.6|0.3.6|0.3.6|>=0.3.2,<0.3.3.0a0',build='2|1|2|3|1|0']
scipy==1.0.0 -> openblas[version='0.2.20|0.2.20.*'] -> openblas-devel[version='>=0.2.20,<0.2.21.0a0']
Package pyqt conflicts for:
matplotlib==2.0.2 -> pyqt=5.6
jupyter==1.0.0 -> qtconsole -> pyqt[version='4.11.*|5.6.*|>=5.6.0,<5.7.0a0|>=5.9.2,<5.10.0a0']
Package ssl_match_hostname conflicts for:
matplotlib==2.0.2 -> tornado -> ssl_match_hostname
bokeh==0.12.13 -> tornado[version='>=4.3'] -> ssl_match_hostname
tornado[version='>=4.0,<5.0'] -> ssl_match_hostname
Package tornado conflicts for:
jupyter==1.0.0 -> ipykernel -> tornado[version='>=4|>=4,<6|>=4.0|>=4.2|>=5.0|>=5.0,<7|>=4.1,<7']
tornado[version='>=4.0,<5.0']
bokeh==0.12.13 -> tornado[version='>=4.3']
matplotlib==2.0.2 -> tornado
ipywidgets==7.1.1 -> ipykernel[version='>=4.5.1'] -> tornado[version='>=4.0|>=4.2']
Package libgcc-ng conflicts for:
numpy==1.11.3 -> libgcc-ng[version='>=4.9|>=7.3.0|>=7.2.0']
numpy==1.11.3 -> python[version='>=3.7,<3.8.0a0'] -> libgcc-ng[version='>=7.5.0|>=8.2.0']
Package pyparsing conflicts for:
matplotlib==2.0.2 -> pyparsing
pytest -> packaging -> pyparsing[version='>=2.0.2']
Package pytest conflicts for:
pytest
pytest-cov -> pytest[version='>=3.6|>=4.6']
Package _openmp_mutex conflicts for:
tornado[version='>=4.0,<5.0'] -> libgcc-ng[version='>=7.3.0'] -> _openmp_mutex[version='>=4.5']
matplotlib==2.0.2 -> libgcc-ng[version='>=7.2.0'] -> _openmp_mutex[version='>=4.5']
scipy==1.0.0 -> libgcc-ng[version='>=7.2.0'] -> _openmp_mutex[version='*|>=4.5',build=*_llvm]
numexpr==2.6.4 -> libgcc-ng[version='>=7.2.0'] -> _openmp_mutex[version='*|>=4.5',build=*_llvm]
pyproj==1.9.5.1 -> libgcc-ng[version='>=7.3.0'] -> _openmp_mutex[version='>=4.5']
numpy==1.11.3 -> libgcc-ng[version='>=7.3.0'] -> _openmp_mutex[version='*|>=4.5',build=*_llvm]
Package jinja2 conflicts for:
bokeh==0.12.13 -> jinja2[version='>=2.7']
jupyter==1.0.0 -> nbconvert -> jinja2
Package libstdcxx-ng conflicts for:
numpy==1.11.3 -> python[version='>=3.6,<3.7.0a0'] -> libstdcxx-ng[version='>=7.2.0|>=7.5.0']
numpy==1.11.3 -> libstdcxx-ng[version='>=4.9|>=7.3.0']
Package ipywidgets conflicts for:
jupyter==1.0.0 -> ipywidgets
ipywidgets==7.1.1
Package liblapacke conflicts for:
numpy==1.11.3 -> blas=[build=openblas] -> liblapacke==3.8.0[build='4_mkl|9_mkl|10_mkl|13_mkl|14_mkl|15_mkl|4_openblas|5_openblas|11_openblas|16_openblas|15_openblas|14_openblas|13_openblas|12_openblas|10_openblas|9_openblas|8_openblas|7_openblas|6_openblas|12_mkl|11_mkl|8_mkl|7_mkl|6_mkl|5_mkl']
scipy==1.0.0 -> blas=[build=openblas] -> liblapacke==3.8.0[build='4_mkl|9_mkl|10_mkl|13_mkl|14_mkl|15_mkl|4_openblas|5_openblas|11_openblas|16_openblas|15_openblas|14_openblas|13_openblas|12_openblas|10_openblas|9_openblas|8_openblas|7_openblas|6_openblas|12_mkl|11_mkl|8_mkl|7_mkl|6_mkl|5_mkl']
numexpr==2.6.4 -> blas=[build=openblas] -> liblapacke==3.8.0[build='4_mkl|9_mkl|10_mkl|13_mkl|14_mkl|15_mkl|4_openblas|5_openblas|11_openblas|16_openblas|15_openblas|14_openblas|13_openblas|12_openblas|10_openblas|9_openblas|8_openblas|7_openblas|6_openblas|12_mkl|11_mkl|8_mkl|7_mkl|6_mkl|5_mkl']
Package pathlib2 conflicts for:
pytest-cov -> pytest[version='>=4.6'] -> pathlib2[version='>=2.2.0']
pytest -> pathlib2[version='>=2.2.0']
ipywidgets==7.1.1 -> ipython[version='>=4.0.0'] -> pathlib2
Package hdf4 conflicts for:
hdf4==4.2.12
netcdf4==1.2.4 -> libnetcdf=4.4 -> hdf4[version='>=4.2.13,<4.2.14.0a0|>=4.2.13,<4.3.0a0']The following specifications were found to be incompatible with your CUDA driver:
- feature:/linux-64::__cuda==10.2=0
- feature:|@/linux-64::__cuda==10.2=0
Your installed CUDA driver is: 10.2