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atlas-based-3d-brain-segmentation-in-t1-mri

Fully supervised, multi-class 3D brain segmentation in T1 MRI, using atlas-based segmentation algorithms (label propagation, tissue models, Expectation-Maximization algorithm).

atlases

Segmentations of Neuroanatomy on Hi-Res T1 and T2 MRIs and publicly available population averages in MNI space

attention-gated-networks

Use of Attention Gates in a Convolutional Neural Network / Medical Image Classification and Segmentation

attention_unet

Raw implementation of attention gated U-Net by Keras

augment3d

Augment 3D images of a focal lesion with 3D rotation, flip, and translation.

auto-gpt

An experimental open-source attempt to make GPT-4 fully autonomous.

autobids

Automated Dicom to BIDS and pipelines using compute canada

autogluon

AutoGluon: AutoML Toolkit for Deep Learning

autokeras

accessible AutoML for deep learning.

automatedkineticmodeling

autopet

repository for autoPET machine lerning challenge

autopet2022

Code for the AutoPET 2022 challenge

avionix

A Python package for building helm charts and Kubernetes templates in an object oriented fashion

awesome-data-labeling

A curated list of awesome data labeling tools

awesome-gan-for-medical-imaging

Awesome GAN for Medical Imaging

aws-healthcare-lifescience-ai-ml-sample-notebooks

baidu-netdisk-downloaderx

⚡️ 一款图形界面的百度网盘不限速下载器，支持 Windows、Linux 和 Mac。

banana

Brain imAgiNg Analysis iN Arcana (Banana): brain imaging analysis workflows implemented in the Arcana framework

batchgenerators

A framework for data augmentation for 2D and 3D image classification and segmentation

batchviewer

A tool to do quick and dirty inspection of multichannel 3D data. I use it mainly to visualize batches for deep learning.

bayesian-sparse-deep-learning

Code for An Adaptive Empirical Bayesian Method for Sparse Deep Learning (NeurIPS'19)

bayesopt

BayesOpt: A toolbox for bayesian optimization, experimental design and stochastic bandits.

beam

Apache Beam

bentoml

🍱 Machine Learning Toolkit for packaging and deploying models

beta_dose_point_kernels

This repository consists of GATE scripts for dose point kernels simulations for beta emitting radionuclides and monoenergetic electrons.

bidskit

Utility functions for working with DICOM and BIDS neuroimaging data

biomedgpt

BiomedGPT: A Unified and Generalist Biomedical Generative Pre-trained Transformer for Vision, Language, and Multimodal Tasks

bisweb

This is the repository for the BioImage Suite Web Project

blast-ct

Brain Lesion Analysis and Segmentation Tool for Computed Tomography

blind_image_denoising

Implementing CVPR 2020 paper "ROBUST AND INTERPRETABLE BLIND IMAGE DENOISING VIA BIAS - FREE CONVOLUTIONAL NEURAL NETWORKS"