dfgao / ctcf_t-all_code

All codes used to generate results and figure that are reported in CTCF project.

Notes

• This repository contains all source code for analyzing the data and generating the results and figures in the paper:

  Cancer-specific CTCF binding facilitates oncogenic transcriptional dysregulation
  Celestia Fang^*, Zhenjia Wang^*, Cuijuan Han, Stephanie L. Safgren, Kathryn A. Helmin, Emmalee R. Adelman, Valentina Serafin, Giuseppe Basso, Kyle P. Eagen, Alexandre Gaspar-Maia, Maria E. Figueroa, Benjamin D. Singer, Aakrosh Ratan, Panagiotis Ntziachristos^#, Chongzhi Zang^#. Genome Biology 21, 247 (2020)

• A README file is attached to each folder/subfolder.

• For scripts used to generate the figures, please refer to README_figure.rst.

Download

• To download the processed data, including the union of all CTCF binding sites, the constitutive CTCF binding sites, the cancer-specific CTCF binding sites, etc., please check here.