dfm / carma Goto Github PK

I was trying to install carma on Ubuntu 14.04. Running the 'setup.py' file gives me gcc errors in carma.cpp file. It's seems to be some namespace error. This is the error on terminal:-
"running build
running build_py
running egg_info
writing carma.egg-info/PKG-INFO
writing top-level names to carma.egg-info/top_level.txt
writing dependency_links to carma.egg-info/dependency_links.txt
reading manifest file 'carma.egg-info/SOURCES.txt'
writing manifest file 'carma.egg-info/SOURCES.txt'
copying carma/_carma.cpp -> build/lib.linux-x86_64-2.7/carma
running build_ext
Found Eigen version 3.3.4 in: /usr/local/include/eigen3
building 'carma._carma' extension
gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -Icarma -I/home/sip/anaconda2/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/eigen3 -I/home/sip/anaconda2/include/python2.7 -c carma/_carma.cpp -o build/temp.linux-x86_64-2.7/carma/_carma.o -Wno-unused-function -Wno-uninitialized
cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++ [enabled by default]
In file included from /home/sip/anaconda2/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1777:0,
from /home/sip/anaconda2/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18,
from /home/sip/anaconda2/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from carma/_carma.cpp:271:
/home/sip/anaconda2/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
#warning "Using deprecated NumPy API, disable it by "
^
carma/_carma.cpp: In function ‘PyObject* __pyx_pf_5carma_6_carma_2carma_log_likelihood(PyObject*, double, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*)’:
carma/_carma.cpp:1837:18: error: ‘log_likelihood’ is not a member of ‘carma’
__pyx_t_10 = carma::log_likelihood(__pyx_v_log_sigma, __pyx_t_4, ((double )__pyx_v_arpars->data), __pyx_t_7, ((double )__pyx_v_mapars->data), __pyx_t_9, ((double )__pyx_v_x->data), ((double )__pyx_v_y->data), ((double )__pyx_v_yerr->data));
^
carma/_carma.cpp: In function ‘PyObject __pyx_pf_5carma_6_carma_4carma_psd(PyObject, double, PyArrayObject, PyArrayObject, PyObject)’:
carma/_carma.cpp:2237:5: error: ‘psd’ is not a member of ‘carma’
carma::psd(__pyx_v_log_sigma, __pyx_t_4, ((double )__pyx_v_arpars->data), __pyx_t_9, ((double )__pyx_v_mapars->data), __pyx_t_10, ((double )__pyx_v_f_array->data), ((double )__pyx_v_values->data));
^
carma/_carma.cpp: In function ‘PyObject __pyx_pf_5carma_6_carma_6carma_covariance(PyObject, double, PyArrayObject, PyArrayObject, PyObject*)’:
carma/_carma.cpp:2799:5: error: ‘covariance’ is not a member of ‘carma’
carma::covariance(__pyx_v_log_sigma, __pyx_t_4, ((double *)__pyx_v_arpars->data), __pyx_t_11, ((double *)__pyx_v_mapars->data), __pyx_t_12, ((double *)__pyx_v_tau_array->data), ((double *)__pyx_v_values->data));
^
error: command 'gcc' failed with exit status 1"
Any help with this error is much appreciated.