dmontaner / mdgsa

Multi Dimensional Gene Set Analysis

MultiDimensional Gene Set Analysis

About

The mdgsa library implements the gene set analysis methodology developed in Montaner and Dopazo 2010. It presents a flexible framework for analyzing the enrichment of gene sets along a given ranking of genes. The novelty is that, not just one ranking index but two, may be analyzed and jointly explored in a multidimensional gene set analysis.

Install

Development version is available in GitHub:
https://github.com/dmontaner/mdgsa

You can install the development version form your R session doing:

library (devtools)
install_github ("dmontaner/mdgsa")

Documentation

Vignette

• PDF format
• MD format (readable in GitHub)

mdgsa's Issues

Will be avairable MDGSA for R 4.1?

Hello @dmontaner,

I'm the developer of tappAS, a JAVA application to understand the functional implications of alternative splicing, and uses your MDGSA analysis.

However, in the last Bioconductor release (3.14), the MDGSA package has been removed.

Do you plan to fix the package and upload it again into Bioconductor or GitHub?

Thank you,
Pedro Salguero