Error whilst querying BigWig file: "got an error in bwStatsFromZoom" about libbigwig

[dpryan79]

"Operation now in progress" is the full error message and corresponds to libcurl setting errno to EINPROGRESS. In the python wrapper for this, I tended to see this most often when using multithreading where each thread was querying the remote server (you have to limit your thread numbers when doing that).

[dpryan79]

Weird, I'll have too have a look at this. Note that it might take me a bit of time as I'm off for vacation tomorrow.

[andrewyatz]

Thanks for looking into it. Don't worry about speed of response. Have a nice vacation!

[dpryan79]

Please check the fix20 branch, which at least fixes this exact example.

[andrewyatz]

That seems to work. I'm not sure of any other problematic BigWig files yet but I think you can call this squished

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On 15 March 2017 at 22:30, Devon Ryan ***@***.***> wrote: Please check the fix20 branch, which at least fixes this exact example. — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub <#20 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AAK5GUh9lAo2qCfRQe-PIrZN5feTalIuks5rmGaQgaJpZM4MeGNt> .

[dpryan79]

Cool, when I have time I'll try to figure out what the heck is up with the other issue you reported (for whatever reason, curl was only asking for 8 bytes at a time, which made everything take ages). Once those are both fixed I'll push out a new release.

[andrewyatz]

That's great news thank you

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On Thu, 16 Mar 2017 at 07:25, Devon Ryan ***@***.***> wrote: Cool, when I have time I'll try to figure out what the heck is up with the other issue you reported (for whatever reason, curl was only asking for 8 bytes at a time, which made everything take ages). Once those are both fixed I'll push out a new release. — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub <#20 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AAK5GbWnpzr8thpoFO7zoQmjFh7RgaK2ks5rmOP6gaJpZM4MeGNt> .

[andrewyatz]

I'll close this down as well since 33d436b seems to fix everything

[lidaof]

I also have similar issue while trying to view a large region, but not small region...but sometimes I don't get this error. Is it possible to print out the fail reason? Thanks.

got an error in bwStatsFromZoom in the range 27053199-27069217: Operation now in progress

[lidaof]

Thank you. I am not using the python wrapper. Just single C binary file, but it didn't happen every time. Thanks again.