dpwrussell / columbus_assay_def_xml_to_csv Goto Github PK

Tried to run the script on one of Sharon's layout files. This was the result:
jc168@Jays-iMac ~/Checkout/columbus_assay_def_xml_to_csv (master)
$ python convert_xml_to_csv.py ~/Downloads/2015-03-27exp.xml > ~/Desktop/2015-03-27exp.csv
Traceback (most recent call last):
File "convert_xml_to_csv.py", line 118, in
main()
File "convert_xml_to_csv.py", line 115, in main
convert_file(f)
File "convert_xml_to_csv.py", line 66, in convert_file
namespaces=namespaces)
File "lxml.etree.pyx", line 2186, in lxml.etree._ElementTree.xpath (src/lxml/lxml.etree.c:60010)
File "xpath.pxi", line 359, in lxml.etree.XPathDocumentEvaluator.call (src/lxml/lxml.etree.c:152734)
File "xpath.pxi", line 227, in lxml.etree._XPathEvaluatorBase._handle_result (src/lxml/lxml.etree.c:151097)
File "xpath.pxi", line 213, in lxml.etree._XPathEvaluatorBase._raise_eval_error (src/lxml/lxml.etree.c:150950)
lxml.etree.XPathEvalError: Invalid expression