drj001 / asmap

ASMap

Linkage Map Construction using the MSTmap Algorithm

Functions for Accurate and Speedy linkage map construction, manipulation and diagnosis of Doubled Haploid, Backcross and Recombinant Inbred 'R/qtl' objects. This includes extremely fast linkage map clustering and optimal marker ordering using 'MSTmap' (see Wu et al.,2008).

Installing

To install the latest version from CRAN, use the following:

install.packages("ASMap")

To install the latest development version from GitHub, use the following:

if(!require("remotes")) install.packages("remotes") 
remotes::install_github("DrJ001/ASMap")

Using the package

Load the package and start using it with:

library(ASMap)

If you find this package useful, please cite it! Type citation("ASMap") on the R console to find out how.

asmap's Issues

Problem with title location in Heatmap function

Hi,

Sorry to disturb you with this question. I am trying to generate the heatmap with ASMap as the quality is better than R/QTL. I was successful at generating the map and it fits what I have generated previously with R/QTL. However, the title of the plot ''Pairwise recombination fraction and LOD scores'' is now located in the plot instead of being above it. When I generated the plot, I used the QTL objects so the mistake might come from there.

I called this function and everything worked, except for the title:
heatMap(nameofmyobject, lmax = 50)

Thanks.