dwaithe Goto Github PK

amca

This is a repository for the Automated Microscopy Control Environment.

darknet3ab

density_kernel_estimation_3d

3-D Density Kernel Estimation for Counting in Microscopy Image Volumes using 3-D Image Filters and Random Decision Trees

dwaithe.github.io

faster-rcnn-tensorflow-python3.5

Tensorflow Faster R-CNN for Windows and Python 3.5

fcs_point_correlator

fcs_scanning_correlator

fcsfitjs

FoCuS-fit-JS is a JavaScript browser based software for fitting correlated FCS (Fluorescence Correlation Spectroscopy) curves. This is browser version of the fitting software previously included with FoCuS-point and FoCuS-scan Python software.

foci_measurements

Analysis scripts for 3-D volumetric and distance measurements between foci.

forestcountingdemo

Learnig to count with a Regression Forest and Structured Labels

ga-event-track

A jQuery plugin to capture DOM events and send event data to Google Analytics.

generalmacros

This repository contains macros, scripts and teaching material for quantitative image analysis using ImageJ Fiji and Python

gp-plugin

Generalised Polarisation plugin for Fiji and ImageJ [1].

idr-notebooks

Jupyter Notebooks for the Image Data Resource

ijpython_roi

python implementation which allows you incorporate regions of interest and overlays in tiff files compatible with ImageJ software

join_the_dots

Jupyter lab notebook with Python code for automating the completion of dot-2-dot images.

keras-retinanet

Keras implementation of RetinaNet object detection.

linear_regression_practical

This repository hosts the short-course developed by Dominic Waithe teaching Linear Regression. The content was designed to teach CGAT fellows (https://github.com/cgat-developers) who learn methods in bioinformatics. The course is Python3 based and teaches scikit-learn as well as pandas and a few other libraries.

live-coding

This is a repository containing notebooks demonstrating along corresponding with YouTube videos, coding strategies to various problems.

maximafinder

model-training

GBI/ELIXIR/EuBI/NEUBIAS hackathon model case

multipletau

Multiple-tau algorithm.

nanosimpy

The nano simulation python library.

onbi_image_analysis

This repository contains the materials for the University of Oxford DTC ONBI Image Analysis course

peroxisome_scripts

picoquant-time-tagged-file-format-demos

Demo Code for PicoQuants Time Tagged File Formats

pycorrfit

data analysis and fitting software for fluorescence correlation spectroscopy (FCS)

qbrain

QBrain, machine learning software for identifying cells in 3-D tissue.

quantifly

QuantiFly, density estimation for counting Drosophila eggs.

scikit-learn

scikit-learn: machine learning in Python