Related Issues (20)
- Call the most likely mutation HOT 1
- Try to remove dependence on third-party/bamtools
- Initialzation of m_samples() and ReadDataVector
- Take genotype likelihoods or raw counts as input HOT 1
- Implement new ReadData constructor for different cases HOT 3
- Documentation
- Exit when specified reference genome is not readable
- -i option for accuMUlate broken
- Use all sequencing data to infer ancestral genotype when summarising mutation
- useful error when specified config file unavailable HOT 1
- Clean up
- Only use primary lines by default HOT 1
- Deletions being reported as SNPs HOT 3
- Mutational context in results table HOT 1
- Core dumped HOT 6
- Document estimation of Phi
- sorting of BAM files
- Abort
- Using accuMUlate with n=3
- Core dump
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