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mberacochea avatar mberacochea commented on June 10, 2024 1

Thank you @hoelzer I have a fix 20a8672 I'm testing it.

@neptuneyt I'll merge the fix into dev and master as soon I finish testing it.

from emg-viral-pipeline.

hoelzer avatar hoelzer commented on June 10, 2024

@neptuneyt thanks for reporting and sorry this happens due to a version check we implemented for Nextflow and that thus not properly work since the version number was bumped from 20.x.x to 21.x.x.

@mberacochea the code is here:
https://github.com/EBI-Metagenomics/emg-viral-pipeline/blob/master/virify.nf#L42

I think this code can be simply removed and replaced by

manifest {
    mainScript = 'virify.nf'
    nextflowVersion = '>=20.01.0'
}

in nextflow.config (https://github.com/EBI-Metagenomics/emg-viral-pipeline/blob/master/nextflow.config#L2)

from emg-viral-pipeline.

mberacochea avatar mberacochea commented on June 10, 2024

@neptuneyt can you try with -r dev (to use the dev branch)?

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