egeulgen / driver Goto Github PK

Dear maintainer,

You have file 'driveR/man/driveR.Rd' with \docType{package}, likely
intended as a package overview help file, but without the appropriate
PKGNAME-package \alias as per "Documenting packages" in R-exts.

This seems to be the consequence of the breaking change

Using @doctype package no longer automatically adds a -package alias.
Instead document _PACKAGE to get all the defaults for package
documentation.

in roxygen2 7.0.0 (2019-11-12) having gone unnoticed, see
r-lib/roxygen2#1491.

As explained in the issue, to get the desired PKGNAME-package \alias
back, you should either change to the new approach and document the new
special sentinel

"_PACKAGE"

or manually add

@Aliases driveR-package

if remaining with the old approach.

Please fix in your master sources as appropriate, and submit a fixed
version of your package within the next few months.

Best,
-k

Prepare for release:

• Check current CRAN check results
• Polish NEWS
• devtools::build_readme()
• urlchecker::url_check()
• devtools::check(remote = TRUE, manual = TRUE)
• devtools::check_win_devel()
• rhub::check_for_cran()
• revdepcheck::revdep_check(num_workers = 4)
• Update cran-comments.md
• Review pkgdown reference index for, e.g., missing topics
• Draft blog post

Submit to CRAN:

• usethis::use_version('minor')
• devtools::submit_cran()
• Approve email

Wait for CRAN...

• Accepted 🎉
• usethis::use_github_release()
• usethis::use_dev_version()
• Finish blog post
• Tweet
• Add link to blog post in pkgdown news menu

Prepare for release:

• git pull
• Check current CRAN check results
• Check if any deprecation processes should be advanced, as described in Gradual deprecation
• Polish NEWS
• devtools::build_readme()
• urlchecker::url_check()
• devtools::check(remote = TRUE, manual = TRUE)
• devtools::check_win_devel()
• rhub::check_for_cran()
• revdepcheck::revdep_check(num_workers = 4)
• Update cran-comments.md
• git push
• Draft blog post

Submit to CRAN:

• usethis::use_version('minor')
• devtools::submit_cran()
• Approve email

Wait for CRAN...

• Accepted 🎉
• git push
• usethis::use_github_release()
• usethis::use_dev_version()
• git push
• Finish blog post
• Tweet
• Add link to blog post in pkgdown news menu

Prepare for release:

• git pull
• Check current CRAN check results
• Polish NEWS
• usethis::use_github_links()
• urlchecker::url_check()
• devtools::build_readme()
• devtools::check(remote = TRUE, manual = TRUE)
• devtools::check_win_devel()
• revdepcheck::revdep_check(num_workers = 4)
• Update cran-comments.md
• git push

Submit to CRAN:

• usethis::use_version('patch')
• devtools::submit_cran()
• Approve email

Wait for CRAN...

• Accepted 🎉
• usethis::use_github_release()
• usethis::use_dev_version(push = TRUE)

Allow gene-level SCNA data frame to be used as input for create_features_df()

Prepare for release:

• devtools::build_readme()
• Check current CRAN check results
• devtools::check(remote = TRUE, manual = TRUE)
• devtools::check_win_devel()
• rhub::check_for_cran()
• revdepcheck::revdep_check(num_workers = 4)
• Update cran-comments.md
• Polish NEWS
• Review pkgdown reference index for, e.g., missing topics

Submit to CRAN:

• usethis::use_version('patch')
• devtools::submit_cran()
• Approve email

Wait for CRAN...

• Accepted 🎉
• usethis::use_github_release()
• usethis::use_dev_version()