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mbu

Movie builder

mds-approximations

Repository to hold new mds approximations code. The goal is to test all the ones we have access too and just move the best to skbio.

metagenomics_pooling_notebook

Jupyter notebook to assist wet lab shotgun pipeline

metagenomics_pooling_notebook-1

Jupyter notebook to assist wet lab shotgun pipeline

metoo

Staging ground for QIIME 2 development

mg-scripts

Knight Lab internal Metagenomic processing scripts for demultiplexing, QC and host removal

micromotion

Final project for CSCI7001-11

micronota

annotation pipeline for microbial genomes and metagenomes

mmrm

Mixed Models for Repeated Measures (MMRM) in R.

monte_carlo_power

smulations for monte carlo power

multivis

System for visualizing the same data in different ways

mutt

Unofficial git mirror/fork for mutt

my-microbes

neomutt

Bringing together all the Mutt code

ngs

Timeline of sequencing cost

numpy

Numpy main repository

nutrition

pandas

Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more

phd-thesis

Doctoral dissertation

platypus

Confirming specific taxonomic groups within your samples.

powerpointing-is-rude

A really stupid terminal slide presenter

prediction-strength

Implementation in MATLAB of the prediction strength algorithm described in: R. Tibshirani, G. Walther, "Cluster Validation by Prediction Strength", American Statistical Association, Institute of Mathematical Statistics and Interface Foundation of North America 2005, Journal of Computational and Graphical Statistics, Volume 14 Number 3, Pages 511-528.

prep

Procesamiento de datos sobre la elección del 2012 en México.

protobiom

Prototypes for BIOM Format 2.0.0

py-codacore

pyqi

Tools for developing and testing command line interfaces in Python.

q2-american-gut

A QIIME2 plugin for working with and processing American Gut data

q2-chemistree

Hierarchical orderings for mass spectrometry data

q2-composition

QIIME2 plugin for compositional data analysis

q2-deblur