Had a user attempt to run the ZFVascQuant_GUI_02122020.ijm macro file pointing at a directory path that contained spaces.
This can be overcome by modifying Line155 of that code to include [square brackets] around the path +filename
eg. run("Bio-Formats Importer", "open=[" + path + filelist[i] + "] autoscale color_mode=Default split_channels view=Hyperstack stack_order=XYCZT");
Line 197 creates a directory which contains a link to the github repository. This link is not compatible for windows as the file path slashes point the wrong way.
The command File.separator; can be used to match the system file seperator if required (eg. fs = File.separator; ) but would likely result in excess subdirectories anyway.
Perhaps making a .txt file in the directory with the relevant github directory could be of use, or printing this info into the log window.
can we examine multiscale TF in more depth? i.e. when vessel diameters span a large range, can multiscale be integrated
(note EK: Frangi filter does not really work on the data we studied https://etheses.whiterose.ac.uk/27497/;
that's why we went for Sato -- however it seems that the current TF/Sato implementation is not truly multiscale)