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GloBAM data management plan

Home Page: https://enram.github.io/globam-dmp/

License: Creative Commons Attribution 4.0 International

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globam

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adokter avatar cecilianilsson709 avatar peterdesmet avatar

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globam-dmp's Issues

Reading us pvol data

@adokter is this statement correct:

See [this page](https://www.ncdc.noaa.gov/data-access/radar-data/radar-decoding) for available decoding tools of the radar format. US `pvol` data can be read in `bioRad` with [`read_pvolfile()`](http://adokter.github.io/bioRad/reference/read_pvolfile.html).

Or do US pvol file need preprocessing before they can be read by biorad?

Define vpts tabular format

Define which columns to include in a tabular format for vpts data (vertical profile time series). This file format will be used to generate monthly time series per radar, which are more convenient to use then individual hdf5 vp files. For discussion, see adokter/vol2bird#120

Document climate data in DMP

"Climate data" was listed as an external data source we plan to use for GloBAM, which means we need to document it in our DMP.

  • What WP is going to use "climate data"?
  • What source will be used for this data?
  • Who can answer these questions? ๐Ÿคทโ€โ™‚๏ธ

Where to store US vp data?

@adokter, if I understood correctly, vp data are being generated for the 25 year pvol archive in the US. How far along in this process are you and where are these data planned to be stored?

Ideally we can combine these with the European data on S3 (either as one or two buckets) and provide single point access via http://enram.github.io/data-repository/ ?

Document artificial light data in DMP

"Artificial light data" was listed as an external data source we plan to use for GloBAM, which means we need to document it in our DMP.

  • What WP is going to use "artificial light data"?
  • What source will be used for this data?
  • Who can answer these questions? ๐Ÿคทโ€โ™‚๏ธ

Enlist polar volume (pvol) data currently stored by one of the partners

For a limited set of countries and time periods, partners of the globam project already store pvol data at the moment. It is important to have an idea of what we would have available for the envisioned period 2016-2018 (3 years of data).

On this gsheet, the third sheet available pvol data provides an overview of the existing radars. Please, provide as a comment to the specific cell the number of days you have pvol data available. We prepared columns on a year basis (2016 other partners,....) for each radar (we'll compile the information based on these comments).

@jshamoun I do think uva in particular has some data stored, so some columns are already setup for you with write access ;-)

Define chapter on software

It hasn't been discussed yet, but the DMP should probably include a section on where we will publish software and how open source these will be. Rmd should be called 8_software.Rmd.

  • biorad
  • processing pipeline
  • analysis scripts

Update travis.yml to also commit data files

The Rmd will download the opera database into this repo:

download.file("http://eumetnet.eu/wp-content/themes/aeron-child/observations-programme/current-activities/opera/database/OPERA_Database/OPERA_RADARS_DB.json", here("data", "OPERA_RADARS_DB.json"))

However, when the bookdown is running on Travis, that file will be downloaded, but not committed. We therefore need to update .travis.yml to include those commit steps.

Add DBZH, TH and VRADH ppi plots for all radars on the wiki

  • radX_yyyymmddThhmmss_vradh: screenshot_ppi_VRADH 0.5 degrees
  • radX_yyyymmddThhmmss_dbzh: screenshot ppi DBZH 0.5 degrees
  • radX_yyyymmddThhmmss_vradh_vcp2: screenshot_ppi_VRADH 0.5 degrees, if PRF different
  • radX_yyyymmddThhmmss_dbzh_vcp2: screenshot ppi DBZH 0.5 degrees, if PRF different

Define chapter on publications

It hasn't been discussed yet, but the DMP should probably include a section on where we will publish papers and how open access these will be. Rmd should be called 8_publications.Rmd.

Create file listing of pvol archive

To get an idea of the scope of the pvol data on BALTRAD, we need a file listing. That would allow us to create an overview of the coverage.

Transfer wiki to bookdown

Documenting the DMP in the wiki was easy to setup, but I wasn't completely satisfied because it does not allow 1) pull requests for suggesting changes, 2) a pdf download of the DMP (likely to be requested by funder) and 3) overviews generated by code.

I have therefore setup bookdown for this repository. The DMP can now be maintained as .Rmd files in src. Each time a commit is made to master, these will be bundled automatically by travis and generated as a website at https://enram.github.io/globam-dmp/

Advantages:

  • Contributions to the DMP can be made as pull requests
  • Code chunks can be included (e.g. here)
  • Edits can still be made directly via GitHub (no RStudio required)
  • An up-to-date pdf version of the dmp is generated: https://enram.github.io/globam-dmp/globam-dmp.pdf
  • The layout of the DMP is a bit more professional than the GitHub wiki and can be further customized if need be.

Let me know if you have comments/suggestions!

I still need to:

  • Transfer remaining info from wiki to .Rmd (already done for Europe)
  • Close wiki
  • Document how to make contributions

Create figures to assess baltrad pvol coverage

All time figure

To have a better idea of the pvol data coverage in BALTRAD and compare radars over years, create heatmap figure with:

  • rows: radars (164)
  • columns: weeks (8 years * 52 = 416 and growing)
  • values: colour gradient for % of expected data files (depends on sampling interval)

Year figures

For more in depth inspection (but still ability to compare radars), create heatmap figure with:

  • rows: radars (164)
  • columns: days (366)
  • values: colour gradient for % of expected data files (depends on sampling interval)

For both figures, we'll have to see if we should switch rows and columns. Figures could be created as RShiny and/or static.

Document wind/weather data in DMP

"Weather data" was listed as an external data source we plan to use for GloBAM, which means we need to document it in our DMP.

  • What WP is going to use "weather data"? Is it wind data only?
  • What source will be used for this data?
  • Who can answer these questions? ๐Ÿคทโ€โ™‚๏ธ

Document land use data in DMP

Forgot about one more external data source:

"Land use" was listed as an external data source we plan to use for GloBAM, which means we need to document it in our DMP.

  • What WP is going to use "land use data"?
  • What source will be used for this data?
  • Who can answer these questions? ๐Ÿคทโ€โ™‚๏ธ

Document wind energy installations data in DMP

"Wind energy installations" was listed as an external data source we plan to use for GloBAM, which means we need to document it in our DMP.

  • What WP is going to use data on "wind energy installations"?
  • What source will be used for this data?
  • Who can answer these questions? ๐Ÿคทโ€โ™‚๏ธ

Documenting access, license and scope for US pvol data

@adokter or @CeciliaNilsson709 could you document the US pvol data for the DMP in this document?

For reference, here's what I wrote for the European pvol data: Rmd and webpage.

From what I know, it's:

  • Source: NEXRAD, but what is the access point
  • License: free to use (url for this info)
  • Format: odim?
  • Geographical scope: any good page with a list of all NEXRAD radars? How many of these generate data? See the European section
  • Temporal scope: 25 years, from x to x

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