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License: BSD 2-Clause "Simplified" License
For protein superfamily sequence profile alignment and curation.
License: BSD 2-Clause "Simplified" License
Attached file contains 2 test scenarios: test and test2
The following gives the desired supases_aln.cma output:
cd test
fammer.py build --clean --mapgaps Superfamily/
run_gaps Superfamily supases
However, in scenario test2, there is an error. The difference between test and test2 is nothing but an addition of a sequence in each of the fasta files inside the Superfamily directory. Ideally, this should not cause any trouble. However the execution of the following commands gives "Fatal: deletion at last position in cma file 3" error in the run_gaps step:
cd test2
fammer.py build --clean --mapgaps Superfamily/
run_gaps Superfamily supases
Note: I removed the --globalgenafpair flag in the mafft command since it is no longer supported
ex_to_etal.zip
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