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GPU accelerated python library for generation of Digitally Reconstructed Radiographs (March 2018)

CMake 0.68% Cuda 87.31% Python 12.01%

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cuda_digitallyreconstructedradiographs's Issues

error LNK2038:

when I rebuild the SiddonGpuPy.cp36-win_amd64.pyd, error occurred as follow:

SiddonGpu.lib(SiddonGpu_generated_siddon_class.cu.obj) : error LNK2038: 检测到“RuntimeLibrary”的不匹配项: 值“MD_DynamicRelease”不匹配值“MT_StaticRelease”(SiddonGpuPy.obj 中)
正在创建库 build\temp.win-amd64-3.6\Release\SiddonGpuPy.cp36-win_amd64.lib 和对象 build\temp.win-amd64-3.6\Release\SiddonGpuPy.cp36-win_amd64.exp
LINK : warning LNK4098: 默认库“MSVCRT”与其他库的使用冲突；请使用 /NODEFAULTLIB:library
G:\17 Files\CUDA_DigitallyReconstructedRadiographs-master\SiddonPythonModule\SiddonGpuPy.cp36-win_amd64.pyd : fatal error LNK1319: 检测到 1 个不匹配项
error: command 'C:\Program Files (x86)\Microsoft Visual Studio\2019\Professional\VC\Tools\MSVC\14.28.29333\bin\HostX86\x64\link.exe' failed with exit status 1319

Static release ?

Hi,
I got an issue when I try to rebuild the python package with this command :

python setup.py build_ext --inplace

Here is the logs I got

running build_ext
skipping 'SiddonGpuPy.cpp' Cython extension (up-to-date)
building 'SiddonGpuPy' extension
D:\Program Files\Microsoft Visual Studio\2022\Community\VC\Tools\MSVC\14.32.31326\bin\HostX86\x64\cl.exe /c /nologo /Ox /W3 /GL /DNDEBUG /MT -IC:\RoboDK\Python37\lib\site-packages\numpy\core\include -IC:\Users\Thomas\Documents\CUDA_DigitallyReconstructedRadiographs\SiddonPythonModule\includeD:\CUDA\include -IC:\RoboDK\Python37\include -IC:\RoboDK\Python37\include "-ID:\Program Files\Microsoft Visual Studio\2022\Community\VC\Tools\MSVC\14.32.31326\ATLMFC\include" "-ID:\Program Files\Microsoft Visual Studio\2022\Community\VC\Tools\MSVC\14.32.31326\include" "-IC:\Program Files (x86)\Windows Kits\NETFXSDK\4.8\include\um" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.19041.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\10\\include\10.0.19041.0\\shared" "-IC:\Program Files (x86)\Windows Kits\10\\include\10.0.19041.0\\um" "-IC:\Program Files (x86)\Windows Kits\10\\include\10.0.19041.0\\winrt" "-IC:\Program Files (x86)\Windows Kits\10\\include\10.0.19041.0\\cppwinrt" /EHsc /TpSiddonGpuPy.cpp /Fobuild\temp.win-amd64-3.7\Release\SiddonGpuPy.obj
SiddonGpuPy.cpp
C:\RoboDK\Python37\lib\site-packages\numpy\core\include\numpy\npy_1_7_deprecated_api.h(14) : Warning Msg: Using deprecated NumPy API, disable it with #define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION
D:\Program Files\Microsoft Visual Studio\2022\Community\VC\Tools\MSVC\14.32.31326\bin\HostX86\x64\link.exe /nologo /INCREMENTAL:NO /LTCG /nodefaultlib:libucrt.lib ucrt.lib /DLL /MANIFEST:EMBED,ID=2 /MANIFESTUAC:NO /LIBPATH:C:\Users\Thomas\Documents\CUDA_DigitallyReconstructedRadiographs\SiddonClassLib\build\Release /LIBPATH:D:\CUDA\lib\x64 /LIBPATH:C:\RoboDK\Python37\libs /LIBPATH:C:\RoboDK\Python37\PCbuild\amd64 "/LIBPATH:D:\Program Files\Microsoft Visual Studio\2022\Community\VC\Tools\MSVC\14.32.31326\ATLMFC\lib\x64" "/LIBPATH:D:\Program Files\Microsoft Visual Studio\2022\Community\VC\Tools\MSVC\14.32.31326\lib\x64" "/LIBPATH:C:\Program Files (x86)\Windows Kits\NETFXSDK\4.8\lib\um\x64" "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\lib\10.0.19041.0\ucrt\x64" "/LIBPATH:C:\Program Files (x86)\Windows Kits\10\\lib\10.0.19041.0\\um\x64" SiddonGpu.lib cudart_static.lib /EXPORT:PyInit_SiddonGpuPy build\temp.win-amd64-3.7\Release\SiddonGpuPy.obj /OUT:C:\Users\Thomas\Documents\CUDA_DigitallyReconstructedRadiographs\SiddonPythonModule\SiddonGpuPy.cp37-win_amd64.pyd /IMPLIB:build\temp.win-amd64-3.7\Release\SiddonGpuPy.cp37-win_amd64.lib
SiddonGpu.lib(SiddonGpu_generated_siddon_class.cu.obj) : error LNK2038: mismatch detected for 'RuntimeLibrary': value 'MD_DynamicRelease' doesn't match value 'MT_StaticRelease' in SiddonGpuPy.obj
   Creating library build\temp.win-amd64-3.7\Release\SiddonGpuPy.cp37-win_amd64.lib and object build\temp.win-amd64-3.7\Release\SiddonGpuPy.cp37-win_amd64.exp
LINK : warning LNK4098: defaultlib 'MSVCRT' conflicts with use of other libs; use /NODEFAULTLIB:library
C:\Users\Thomas\Documents\CUDA_DigitallyReconstructedRadiographs\SiddonPythonModule\SiddonGpuPy.cp37-win_amd64.pyd : fatal error LNK1319: 1 mismatches detected
error: command 'D:\\Program Files\\Microsoft Visual Studio\\2022\\Community\\VC\\Tools\\MSVC\\14.32.31326\\bin\\HostX86\\x64\\link.exe' failed with exit status 1319

Do I need to change the compilation options of the VS project ? Is it really a LIB required for the python package ?
Sorry I'm kind of beginner in Cython.

Regards,
Thomas.

Cuda input issue

Hi... I am a beginner. I gave the inputs as specified. But I am getting the DRR output as zero. Can you please tell me about the various arguments in class object and generatedRR function and how the input looks like?

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